Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22900 and HSERO_RS22905 are separated by 45 nucleotides HSERO_RS22905 and HSERO_RS22910 are separated by 65 nucleotides HSERO_RS22910 and HSERO_RS22915 are separated by 300 nucleotides
HSERO_RS22900: HSERO_RS22900 - meta-pathway of phenol degradation protein, at 5,254,188 to 5,255,138
_RS22900
HSERO_RS22905: HSERO_RS22905 - 3-alpha-hydroxysteroid dehydrogenase, at 5,255,184 to 5,255,951
_RS22905
HSERO_RS22910: HSERO_RS22910 - benzaldehyde dehydrogenase, at 5,256,017 to 5,257,480
_RS22910
HSERO_RS22915: HSERO_RS22915 - Fis family transcriptional regulator, at 5,257,781 to 5,259,616
_RS22915
Position (kb) 5256
5257
5258 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5255.074 kb on + strand at 5255.102 kb on + strand at 5255.244 kb on + strand at 5255.251 kb on + strand at 5255.302 kb on + strand, within HSERO_RS22905 at 5255.340 kb on + strand, within HSERO_RS22905 at 5255.436 kb on + strand, within HSERO_RS22905 at 5255.557 kb on + strand, within HSERO_RS22905 at 5255.557 kb on + strand, within HSERO_RS22905 at 5255.557 kb on + strand, within HSERO_RS22905 at 5255.669 kb on + strand, within HSERO_RS22905 at 5255.677 kb on - strand, within HSERO_RS22905 at 5255.682 kb on - strand, within HSERO_RS22905 at 5255.736 kb on - strand, within HSERO_RS22905 at 5255.788 kb on + strand, within HSERO_RS22905 at 5255.815 kb on - strand, within HSERO_RS22905 at 5255.945 kb on + strand at 5256.023 kb on - strand at 5256.272 kb on + strand, within HSERO_RS22910 at 5256.285 kb on - strand, within HSERO_RS22910 at 5256.659 kb on + strand, within HSERO_RS22910 at 5256.678 kb on - strand, within HSERO_RS22910 at 5256.826 kb on + strand, within HSERO_RS22910 at 5256.937 kb on + strand, within HSERO_RS22910 at 5256.942 kb on + strand, within HSERO_RS22910 at 5256.950 kb on - strand, within HSERO_RS22910 at 5257.139 kb on + strand, within HSERO_RS22910 at 5257.164 kb on - strand, within HSERO_RS22910 at 5257.167 kb on + strand, within HSERO_RS22910 at 5257.175 kb on - strand, within HSERO_RS22910 at 5257.183 kb on - strand, within HSERO_RS22910 at 5257.358 kb on - strand at 5257.403 kb on - strand at 5257.491 kb on + strand at 5258.161 kb on + strand, within HSERO_RS22915 at 5258.169 kb on - strand, within HSERO_RS22915 at 5258.341 kb on - strand, within HSERO_RS22915 at 5258.387 kb on + strand, within HSERO_RS22915 at 5258.459 kb on + strand, within HSERO_RS22915 at 5258.472 kb on - strand, within HSERO_RS22915
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 5,255,074 + -1.0 5,255,102 + +0.1 5,255,244 + +0.9 5,255,251 + -0.8 5,255,302 + HSERO_RS22905 0.15 -0.1 5,255,340 + HSERO_RS22905 0.20 -2.1 5,255,436 + HSERO_RS22905 0.33 -1.4 5,255,557 + HSERO_RS22905 0.49 -0.2 5,255,557 + HSERO_RS22905 0.49 -0.2 5,255,557 + HSERO_RS22905 0.49 -0.1 5,255,669 + HSERO_RS22905 0.63 -0.7 5,255,677 - HSERO_RS22905 0.64 -0.6 5,255,682 - HSERO_RS22905 0.65 -0.6 5,255,736 - HSERO_RS22905 0.72 -0.3 5,255,788 + HSERO_RS22905 0.79 -0.1 5,255,815 - HSERO_RS22905 0.82 -1.6 5,255,945 + -0.3 5,256,023 - +0.7 5,256,272 + HSERO_RS22910 0.17 +1.0 5,256,285 - HSERO_RS22910 0.18 -0.4 5,256,659 + HSERO_RS22910 0.44 -1.2 5,256,678 - HSERO_RS22910 0.45 -1.1 5,256,826 + HSERO_RS22910 0.55 -0.1 5,256,937 + HSERO_RS22910 0.63 -2.8 5,256,942 + HSERO_RS22910 0.63 -2.8 5,256,950 - HSERO_RS22910 0.64 +1.1 5,257,139 + HSERO_RS22910 0.77 -1.2 5,257,164 - HSERO_RS22910 0.78 +0.0 5,257,167 + HSERO_RS22910 0.79 +0.5 5,257,175 - HSERO_RS22910 0.79 +0.4 5,257,183 - HSERO_RS22910 0.80 +1.2 5,257,358 - -0.2 5,257,403 - +0.3 5,257,491 + -2.0 5,258,161 + HSERO_RS22915 0.21 +0.9 5,258,169 - HSERO_RS22915 0.21 +0.6 5,258,341 - HSERO_RS22915 0.31 -1.1 5,258,387 + HSERO_RS22915 0.33 +0.3 5,258,459 + HSERO_RS22915 0.37 -0.4 5,258,472 - HSERO_RS22915 0.38 -0.3
Or see this region's nucleotide sequence