Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21940 and HSERO_RS21945 are separated by 159 nucleotides HSERO_RS21945 and HSERO_RS21950 are separated by 21 nucleotides HSERO_RS21950 and HSERO_RS21955 are separated by 11 nucleotides HSERO_RS21955 and HSERO_RS21960 are separated by 221 nucleotides
HSERO_RS21940: HSERO_RS21940 - membrane protein, at 5,020,734 to 5,021,459
_RS21940
HSERO_RS21945: HSERO_RS21945 - hypothetical protein, at 5,021,619 to 5,022,050
_RS21945
HSERO_RS21950: HSERO_RS21950 - membrane protein, at 5,022,072 to 5,022,479
_RS21950
HSERO_RS21955: HSERO_RS21955 - hypothetical protein, at 5,022,491 to 5,022,799
_RS21955
HSERO_RS21960: HSERO_RS21960 - glutamine amidotransferase, at 5,023,021 to 5,024,157
_RS21960
Position (kb) 5022
5023 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5021.895 kb on + strand, within HSERO_RS21945 at 5021.905 kb on + strand, within HSERO_RS21945 at 5021.913 kb on - strand, within HSERO_RS21945 at 5021.913 kb on - strand, within HSERO_RS21945 at 5022.009 kb on - strand at 5022.019 kb on - strand at 5022.045 kb on + strand at 5022.106 kb on + strand at 5022.157 kb on + strand, within HSERO_RS21950 at 5022.169 kb on - strand, within HSERO_RS21950 at 5022.192 kb on - strand, within HSERO_RS21950 at 5022.197 kb on - strand, within HSERO_RS21950 at 5022.203 kb on - strand, within HSERO_RS21950 at 5022.359 kb on + strand, within HSERO_RS21950 at 5022.468 kb on - strand at 5022.510 kb on + strand at 5022.526 kb on + strand, within HSERO_RS21955 at 5022.534 kb on - strand, within HSERO_RS21955 at 5022.664 kb on + strand, within HSERO_RS21955 at 5022.730 kb on + strand, within HSERO_RS21955 at 5022.741 kb on + strand, within HSERO_RS21955 at 5022.749 kb on - strand, within HSERO_RS21955 at 5022.776 kb on + strand at 5022.784 kb on - strand at 5022.845 kb on + strand at 5022.900 kb on + strand at 5022.902 kb on + strand at 5022.943 kb on + strand at 5023.091 kb on - strand at 5023.143 kb on + strand, within HSERO_RS21960 at 5023.470 kb on + strand, within HSERO_RS21960
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 5,021,895 + HSERO_RS21945 0.64 -0.3 5,021,905 + HSERO_RS21945 0.66 -0.3 5,021,913 - HSERO_RS21945 0.68 +0.6 5,021,913 - HSERO_RS21945 0.68 +0.4 5,022,009 - -0.0 5,022,019 - -2.1 5,022,045 + +0.5 5,022,106 + -1.3 5,022,157 + HSERO_RS21950 0.21 -1.5 5,022,169 - HSERO_RS21950 0.24 -0.4 5,022,192 - HSERO_RS21950 0.29 -2.4 5,022,197 - HSERO_RS21950 0.31 -1.9 5,022,203 - HSERO_RS21950 0.32 -0.9 5,022,359 + HSERO_RS21950 0.70 -3.8 5,022,468 - -0.2 5,022,510 + -2.2 5,022,526 + HSERO_RS21955 0.11 -0.6 5,022,534 - HSERO_RS21955 0.14 -0.8 5,022,664 + HSERO_RS21955 0.56 -0.7 5,022,730 + HSERO_RS21955 0.77 -3.9 5,022,741 + HSERO_RS21955 0.81 +0.0 5,022,749 - HSERO_RS21955 0.83 -1.8 5,022,776 + +0.5 5,022,784 - -1.4 5,022,845 + -0.4 5,022,900 + +0.7 5,022,902 + +0.8 5,022,943 + -0.0 5,023,091 - +0.4 5,023,143 + HSERO_RS21960 0.11 -2.1 5,023,470 + HSERO_RS21960 0.39 -0.7
Or see this region's nucleotide sequence