Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21930 and HSERO_RS21935 are separated by 233 nucleotides HSERO_RS21935 and HSERO_RS21940 are separated by 103 nucleotides HSERO_RS21940 and HSERO_RS21945 are separated by 159 nucleotides HSERO_RS21945 and HSERO_RS21950 are separated by 21 nucleotides
HSERO_RS21930: HSERO_RS21930 - tRNA-Arg, at 5,019,752 to 5,019,827
_RS21930
HSERO_RS21935: HSERO_RS21935 - cytochrome C, at 5,020,061 to 5,020,630
_RS21935
HSERO_RS21940: HSERO_RS21940 - membrane protein, at 5,020,734 to 5,021,459
_RS21940
HSERO_RS21945: HSERO_RS21945 - hypothetical protein, at 5,021,619 to 5,022,050
_RS21945
HSERO_RS21950: HSERO_RS21950 - membrane protein, at 5,022,072 to 5,022,479
_RS21950
Position (kb) 5020
5021
5022 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5019.890 kb on - strand at 5020.016 kb on - strand at 5020.050 kb on - strand at 5020.065 kb on + strand at 5020.073 kb on - strand at 5020.073 kb on - strand at 5020.083 kb on - strand at 5020.229 kb on - strand, within HSERO_RS21935 at 5020.422 kb on - strand, within HSERO_RS21935 at 5020.622 kb on + strand at 5020.721 kb on + strand at 5021.030 kb on - strand, within HSERO_RS21940 at 5021.895 kb on + strand, within HSERO_RS21945 at 5021.905 kb on + strand, within HSERO_RS21945 at 5021.913 kb on - strand, within HSERO_RS21945 at 5021.913 kb on - strand, within HSERO_RS21945 at 5022.009 kb on - strand at 5022.019 kb on - strand at 5022.045 kb on + strand at 5022.106 kb on + strand at 5022.157 kb on + strand, within HSERO_RS21950 at 5022.169 kb on - strand, within HSERO_RS21950 at 5022.192 kb on - strand, within HSERO_RS21950 at 5022.197 kb on - strand, within HSERO_RS21950 at 5022.203 kb on - strand, within HSERO_RS21950 at 5022.359 kb on + strand, within HSERO_RS21950
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 5,019,890 - +0.2 5,020,016 - +0.7 5,020,050 - -0.6 5,020,065 + +1.6 5,020,073 - -3.6 5,020,073 - -0.2 5,020,083 - +0.4 5,020,229 - HSERO_RS21935 0.29 -2.4 5,020,422 - HSERO_RS21935 0.63 +0.6 5,020,622 + -1.4 5,020,721 + -0.6 5,021,030 - HSERO_RS21940 0.41 +0.3 5,021,895 + HSERO_RS21945 0.64 -0.3 5,021,905 + HSERO_RS21945 0.66 -0.3 5,021,913 - HSERO_RS21945 0.68 +0.6 5,021,913 - HSERO_RS21945 0.68 +0.4 5,022,009 - -0.0 5,022,019 - -2.1 5,022,045 + +0.5 5,022,106 + -1.3 5,022,157 + HSERO_RS21950 0.21 -1.5 5,022,169 - HSERO_RS21950 0.24 -0.4 5,022,192 - HSERO_RS21950 0.29 -2.4 5,022,197 - HSERO_RS21950 0.31 -1.9 5,022,203 - HSERO_RS21950 0.32 -0.9 5,022,359 + HSERO_RS21950 0.70 -3.8
Or see this region's nucleotide sequence