Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19410

Experiment: Sisomicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.125 mg/ml
4,448,826	+				-1.4
4,448,978	+		HSERO_RS19405	0.24	-2.4
4,449,037	+		HSERO_RS19405	0.32	+0.6
4,449,090	-		HSERO_RS19405	0.38	-0.8
4,449,101	+		HSERO_RS19405	0.40	+0.8
4,449,107	+		HSERO_RS19405	0.41	+0.6
4,449,299	-		HSERO_RS19405	0.65	+1.1
4,449,334	-		HSERO_RS19405	0.70	-0.4
4,449,334	-		HSERO_RS19405	0.70	+0.1
4,449,426	+		HSERO_RS19405	0.82	-0.6
4,449,562	+				+0.2
4,449,570	-				+0.8
4,449,575	+				+1.2
4,449,738	-				+0.4
4,449,788	+				+0.6
4,449,825	+				-0.9
4,449,849	+		HSERO_RS19410	0.14	-0.9
4,449,889	+		HSERO_RS19410	0.24	-0.6
4,449,905	+		HSERO_RS19410	0.27	+0.5
4,449,906	+		HSERO_RS19410	0.27	-0.2
4,449,926	+				+1.6
4,450,103	+		HSERO_RS19410	0.72	-3.0
4,450,171	-		HSERO_RS19410	0.88	-0.6
4,450,220	-				+0.0
4,450,222	+				+0.4
4,450,240	-				+0.1
4,450,313	+				-0.8
4,450,421	+				-2.1
4,450,650	+				-0.4
4,450,673	-		HSERO_RS19415	0.30	+0.8
4,450,729	-		HSERO_RS19415	0.34	-2.1
4,450,745	-		HSERO_RS19415	0.36	+0.2
4,450,781	+				-0.4
4,450,796	+		HSERO_RS19415	0.40	-0.1
4,450,796	+		HSERO_RS19415	0.40	-2.6
4,450,841	-		HSERO_RS19415	0.43	-1.3
4,450,922	+		HSERO_RS19415	0.50	-0.3
4,451,061	-		HSERO_RS19415	0.61	-1.1
4,451,061	-		HSERO_RS19415	0.61	+0.1
4,451,165	+		HSERO_RS19415	0.70	-1.8