Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18840

Experiment: Sisomicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.125 mg/ml
4,321,022	+				-0.3
4,321,022	+				-2.1
4,321,030	-				-3.0
4,321,030	-				+0.6
4,321,052	+				+1.8
4,321,057	+				-2.0
4,321,057	+				-1.3
4,321,064	-				-0.1
4,321,065	-				-0.3
4,321,065	-				-0.1
4,321,074	-				+0.8
4,321,076	-				+0.2
4,321,079	-				-0.2
4,321,092	-				+0.3
4,321,099	-				-0.4
4,321,120	-				+0.2
4,321,435	-		HSERO_RS18835	0.26	-1.0
4,321,444	-		HSERO_RS18835	0.28	-0.2
4,321,445	+		HSERO_RS18835	0.28	-0.2
4,321,455	-		HSERO_RS18835	0.30	+1.6
4,321,458	-		HSERO_RS18835	0.30	-1.2
4,321,496	+		HSERO_RS18835	0.37	-4.2
4,321,496	+		HSERO_RS18835	0.37	+0.8
4,321,829	+				-0.0
4,321,884	+				-0.2
4,321,900	+				-0.5
4,321,944	-				+0.3
4,321,954	-				+0.5
4,322,189	-		HSERO_RS18840	0.25	+0.1
4,322,319	-		HSERO_RS18840	0.41	-0.5
4,322,319	-		HSERO_RS18840	0.41	-0.6
4,322,325	-		HSERO_RS18840	0.42	-0.8
4,322,327	+		HSERO_RS18840	0.42	-0.4
4,322,418	+		HSERO_RS18840	0.54	+0.8
4,322,421	-		HSERO_RS18840	0.54	-0.6
4,322,426	-		HSERO_RS18840	0.55	+0.5
4,322,451	+		HSERO_RS18840	0.58	-0.2
4,322,522	+		HSERO_RS18840	0.67	-0.5
4,322,531	+		HSERO_RS18840	0.68	-0.8
4,322,639	-		HSERO_RS18840	0.82	+0.6
4,322,707	+				-0.7
4,322,744	+				+1.0
4,322,788	-				+0.1
4,322,788	-				-0.2
4,322,918	-				+0.4
4,322,920	+				-1.5
4,322,920	+				-0.6
4,322,934	+				-1.4
4,323,096	+		HSERO_RS18845	0.38	-0.7
4,323,101	+		HSERO_RS18845	0.39	+0.4
4,323,140	-		HSERO_RS18845	0.46	+0.3
4,323,177	+				+0.6
4,323,453	+				+0.5
4,323,516	+				+0.8
4,323,571	+		HSERO_RS18850	0.14	+0.5
4,323,731	+		HSERO_RS18850	0.37	-2.1