Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18830

Experiment: Sisomicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.125 mg/ml
4,318,193	+		HSERO_RS18825	0.26	+0.3
4,318,238	+		HSERO_RS18825	0.31	-0.6
4,318,268	-		HSERO_RS18825	0.34	-0.3
4,318,310	-		HSERO_RS18825	0.38	+0.1
4,318,332	-		HSERO_RS18825	0.40	+0.6
4,318,619	+		HSERO_RS18825	0.70	+0.6
4,318,627	-		HSERO_RS18825	0.71	-0.7
4,318,769	+		HSERO_RS18825	0.85	+0.4
4,318,920	+				+0.2
4,318,937	-				-0.1
4,319,058	-				-1.3
4,319,175	+				+0.2
4,319,214	+				+0.5
4,319,275	+				+0.8
4,319,326	+				-1.1
4,319,393	+		HSERO_RS18830	0.13	-0.3
4,319,582	+		HSERO_RS18830	0.25	+0.2
4,319,605	-		HSERO_RS18830	0.26	-3.1
4,320,012	+		HSERO_RS18830	0.52	-0.9
4,320,049	-		HSERO_RS18830	0.54	+0.4
4,320,267	+		HSERO_RS18830	0.68	-0.5
4,320,270	-		HSERO_RS18830	0.68	-0.7
4,320,316	+		HSERO_RS18830	0.71	-3.0
4,320,358	+		HSERO_RS18830	0.73	-0.7
4,320,420	-		HSERO_RS18830	0.77	+4.2
4,320,465	+		HSERO_RS18830	0.80	+0.1
4,320,482	-		HSERO_RS18830	0.81	-1.0
4,320,526	+		HSERO_RS18830	0.84	-0.1
4,320,697	-				-0.9
4,320,709	+				+0.0
4,320,719	+				+0.6
4,320,725	-				+1.6
4,320,738	+				-2.1
4,320,782	+				-0.9
4,320,790	-				-0.4
4,320,795	-				-1.7
4,320,812	+				-0.1
4,320,812	+				-0.2
4,320,820	+				-0.1
4,320,820	-				-0.8
4,320,835	+				-1.0
4,320,900	+				+0.1
4,320,948	+				+3.2
4,320,955	+				+1.0
4,320,970	+				-0.0
4,320,977	+				+0.9
4,320,978	-				-1.1
4,321,022	+				-0.3
4,321,022	+				-2.1
4,321,030	-				-3.0
4,321,030	-				+0.6
4,321,052	+				+1.8
4,321,057	+				-2.0
4,321,057	+				-1.3
4,321,064	-				-0.1
4,321,065	-				-0.3
4,321,065	-				-0.1
4,321,074	-				+0.8
4,321,076	-				+0.2
4,321,079	-				-0.2
4,321,092	-				+0.3
4,321,099	-				-0.4
4,321,120	-				+0.2
4,321,435	-		HSERO_RS18835	0.26	-1.0
4,321,444	-		HSERO_RS18835	0.28	-0.2
4,321,445	+		HSERO_RS18835	0.28	-0.2
4,321,455	-		HSERO_RS18835	0.30	+1.6
4,321,458	-		HSERO_RS18835	0.30	-1.2
4,321,496	+		HSERO_RS18835	0.37	-4.2
4,321,496	+		HSERO_RS18835	0.37	+0.8