Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18820 and HSERO_RS18825 are separated by 8 nucleotides HSERO_RS18825 and HSERO_RS18830 are separated by 270 nucleotides
HSERO_RS18820: HSERO_RS18820 - LysR family transcriptional regulator, at 4,317,025 to 4,317,930
_RS18820
HSERO_RS18825: HSERO_RS18825 - membrane protein, at 4,317,939 to 4,318,913
_RS18825
HSERO_RS18830: HSERO_RS18830 - membrane protein, at 4,319,184 to 4,320,782
_RS18830
Position (kb) 4317
4318
4319 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4316.967 kb on + strand at 4316.975 kb on - strand at 4316.975 kb on - strand at 4316.975 kb on - strand at 4317.007 kb on + strand at 4317.120 kb on + strand, within HSERO_RS18820 at 4317.182 kb on + strand, within HSERO_RS18820 at 4317.389 kb on + strand, within HSERO_RS18820 at 4317.461 kb on - strand, within HSERO_RS18820 at 4317.840 kb on - strand at 4317.945 kb on - strand at 4317.995 kb on + strand at 4318.103 kb on + strand, within HSERO_RS18825 at 4318.133 kb on - strand, within HSERO_RS18825 at 4318.133 kb on - strand, within HSERO_RS18825 at 4318.193 kb on + strand, within HSERO_RS18825 at 4318.238 kb on + strand, within HSERO_RS18825 at 4318.268 kb on - strand, within HSERO_RS18825 at 4318.310 kb on - strand, within HSERO_RS18825 at 4318.332 kb on - strand, within HSERO_RS18825 at 4318.619 kb on + strand, within HSERO_RS18825 at 4318.627 kb on - strand, within HSERO_RS18825 at 4318.769 kb on + strand, within HSERO_RS18825 at 4318.920 kb on + strand at 4318.937 kb on - strand at 4319.058 kb on - strand at 4319.175 kb on + strand at 4319.214 kb on + strand at 4319.275 kb on + strand at 4319.326 kb on + strand at 4319.393 kb on + strand, within HSERO_RS18830 at 4319.582 kb on + strand, within HSERO_RS18830 at 4319.605 kb on - strand, within HSERO_RS18830
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 4,316,967 + -0.0 4,316,975 - -2.6 4,316,975 - +0.9 4,316,975 - -1.9 4,317,007 + +1.2 4,317,120 + HSERO_RS18820 0.10 -1.9 4,317,182 + HSERO_RS18820 0.17 -2.4 4,317,389 + HSERO_RS18820 0.40 +0.6 4,317,461 - HSERO_RS18820 0.48 +0.2 4,317,840 - -0.5 4,317,945 - -0.5 4,317,995 + -1.2 4,318,103 + HSERO_RS18825 0.17 +1.2 4,318,133 - HSERO_RS18825 0.20 +0.4 4,318,133 - HSERO_RS18825 0.20 +0.3 4,318,193 + HSERO_RS18825 0.26 +0.3 4,318,238 + HSERO_RS18825 0.31 -0.6 4,318,268 - HSERO_RS18825 0.34 -0.3 4,318,310 - HSERO_RS18825 0.38 +0.1 4,318,332 - HSERO_RS18825 0.40 +0.6 4,318,619 + HSERO_RS18825 0.70 +0.6 4,318,627 - HSERO_RS18825 0.71 -0.7 4,318,769 + HSERO_RS18825 0.85 +0.4 4,318,920 + +0.2 4,318,937 - -0.1 4,319,058 - -1.3 4,319,175 + +0.2 4,319,214 + +0.5 4,319,275 + +0.8 4,319,326 + -1.1 4,319,393 + HSERO_RS18830 0.13 -0.3 4,319,582 + HSERO_RS18830 0.25 +0.2 4,319,605 - HSERO_RS18830 0.26 -3.1
Or see this region's nucleotide sequence