Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18115 and HSERO_RS18125 are separated by 961 nucleotides HSERO_RS18125 and HSERO_RS18130 are separated by 36 nucleotides HSERO_RS18130 and HSERO_RS18135 are separated by 61 nucleotides
HSERO_RS18115: HSERO_RS18115 - hypothetical protein, at 4,162,166 to 4,162,468
_RS18115
HSERO_RS18125: HSERO_RS18125 - alkylhydroperoxidase, at 4,163,430 to 4,163,996
_RS18125
HSERO_RS18130: HSERO_RS18130 - nucleoside 2-deoxyribosyltransferase, at 4,164,033 to 4,164,533
_RS18130
HSERO_RS18135: HSERO_RS18135 - acyl-CoA dehydrogenase, at 4,164,595 to 4,167,069
_RS18135
Position (kb) 4163
4164 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4162.443 kb on - strand at 4162.472 kb on - strand at 4162.516 kb on + strand at 4162.596 kb on + strand at 4162.639 kb on - strand at 4162.814 kb on + strand at 4163.046 kb on + strand at 4163.612 kb on + strand, within HSERO_RS18125 at 4163.612 kb on + strand, within HSERO_RS18125 at 4163.677 kb on - strand, within HSERO_RS18125 at 4163.725 kb on + strand, within HSERO_RS18125 at 4163.725 kb on + strand, within HSERO_RS18125 at 4163.782 kb on - strand at 4163.804 kb on + strand, within HSERO_RS18125 at 4163.845 kb on - strand, within HSERO_RS18125 at 4163.860 kb on - strand, within HSERO_RS18125 at 4164.039 kb on - strand at 4164.088 kb on + strand, within HSERO_RS18130 at 4164.116 kb on + strand, within HSERO_RS18130 at 4164.155 kb on - strand, within HSERO_RS18130 at 4164.159 kb on - strand, within HSERO_RS18130 at 4164.159 kb on - strand, within HSERO_RS18130 at 4164.195 kb on + strand, within HSERO_RS18130 at 4164.450 kb on - strand, within HSERO_RS18130 at 4164.468 kb on + strand, within HSERO_RS18130 at 4164.494 kb on + strand at 4164.534 kb on + strand at 4164.579 kb on + strand at 4164.579 kb on + strand at 4164.587 kb on - strand at 4164.818 kb on - strand at 4164.961 kb on - strand, within HSERO_RS18135
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 4,162,443 - -0.2 4,162,472 - -2.0 4,162,516 + +0.2 4,162,596 + -1.0 4,162,639 - +1.2 4,162,814 + -0.7 4,163,046 + +1.4 4,163,612 + HSERO_RS18125 0.32 -0.6 4,163,612 + HSERO_RS18125 0.32 +0.7 4,163,677 - HSERO_RS18125 0.44 +0.8 4,163,725 + HSERO_RS18125 0.52 +0.5 4,163,725 + HSERO_RS18125 0.52 +0.3 4,163,782 - +0.6 4,163,804 + HSERO_RS18125 0.66 -0.2 4,163,845 - HSERO_RS18125 0.73 +0.3 4,163,860 - HSERO_RS18125 0.76 -5.0 4,164,039 - -1.0 4,164,088 + HSERO_RS18130 0.11 +0.5 4,164,116 + HSERO_RS18130 0.17 -0.8 4,164,155 - HSERO_RS18130 0.24 +0.3 4,164,159 - HSERO_RS18130 0.25 -0.8 4,164,159 - HSERO_RS18130 0.25 -1.8 4,164,195 + HSERO_RS18130 0.32 +0.6 4,164,450 - HSERO_RS18130 0.83 +0.2 4,164,468 + HSERO_RS18130 0.87 -0.4 4,164,494 + -0.5 4,164,534 + +0.6 4,164,579 + +0.5 4,164,579 + -0.3 4,164,587 - -0.0 4,164,818 - +0.5 4,164,961 - HSERO_RS18135 0.15 +0.2
Or see this region's nucleotide sequence