Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17315

Experiment: Sisomicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.125 mg/ml
3,966,338	-		HSERO_RS17310	0.37	-0.8
3,966,345	+		HSERO_RS17310	0.37	-1.8
3,966,402	+		HSERO_RS17310	0.41	-2.1
3,966,410	-		HSERO_RS17310	0.42	-1.4
3,966,500	+		HSERO_RS17310	0.48	+0.5
3,966,547	+		HSERO_RS17310	0.51	+0.7
3,966,639	-		HSERO_RS17310	0.58	+0.5
3,966,739	-		HSERO_RS17310	0.64	+0.6
3,966,928	-		HSERO_RS17310	0.77	+0.1
3,966,929	+		HSERO_RS17310	0.77	+0.9
3,966,929	+		HSERO_RS17310	0.77	+0.9
3,967,037	-		HSERO_RS17310	0.85	+0.1
3,967,047	+		HSERO_RS17310	0.86	+0.6
3,967,057	+		HSERO_RS17310	0.86	+0.1
3,967,121	-				+1.0
3,967,166	+				+0.7
3,967,168	+				-2.4
3,967,176	-				-0.9
3,967,176	-				+0.0
3,967,287	+				+2.1
3,967,297	+				-0.2
3,967,297	+				+1.0
3,967,297	+				-2.0
3,967,348	-				-0.4
3,967,363	-				-2.0
3,967,405	+				+0.9
3,967,667	+				+1.4
3,967,677	+				+3.9
3,967,744	+		HSERO_RS17315	0.11	+0.3
3,967,927	-		HSERO_RS17315	0.16	-2.3
3,967,957	+		HSERO_RS17315	0.17	+0.6
3,967,971	+		HSERO_RS17315	0.17	-0.2
3,968,188	-		HSERO_RS17315	0.22	+0.6
3,968,193	-		HSERO_RS17315	0.22	-2.3
3,968,247	+		HSERO_RS17315	0.24	-0.8
3,968,441	-		HSERO_RS17315	0.28	-0.3
3,968,528	+		HSERO_RS17315	0.31	-0.1
3,968,587	+		HSERO_RS17315	0.32	-0.8
3,968,682	+		HSERO_RS17315	0.34	+0.3
3,968,694	-		HSERO_RS17315	0.35	-0.2
3,968,758	+		HSERO_RS17315	0.36	-0.3
3,968,814	+		HSERO_RS17315	0.38	-0.5
3,968,823	+		HSERO_RS17315	0.38	-0.9
3,968,988	+		HSERO_RS17315	0.42	-0.4
3,968,996	-		HSERO_RS17315	0.42	+0.1
3,969,162	-		HSERO_RS17315	0.46	-0.4
3,969,283	-		HSERO_RS17315	0.49	-1.8
3,969,283	-		HSERO_RS17315	0.49	-1.3
3,969,300	+		HSERO_RS17315	0.50	-0.1
3,969,370	+		HSERO_RS17315	0.51	+0.8
3,969,442	+		HSERO_RS17315	0.53	+0.1
3,969,478	-		HSERO_RS17315	0.54	-1.1
3,969,478	-		HSERO_RS17315	0.54	+0.7
3,969,483	-		HSERO_RS17315	0.54	+0.3
3,969,483	-		HSERO_RS17315	0.54	+1.3
3,969,493	+		HSERO_RS17315	0.54	-0.3
3,969,535	-		HSERO_RS17315	0.55	-1.7
3,969,595	+		HSERO_RS17315	0.57	-0.3
3,969,691	-		HSERO_RS17315	0.59	-1.2
3,969,698	+		HSERO_RS17315	0.59	-1.7
3,969,726	-		HSERO_RS17315	0.60	+1.3
3,969,740	+		HSERO_RS17315	0.60	-1.8
3,969,794	-		HSERO_RS17315	0.62	-0.2
3,969,935	-		HSERO_RS17315	0.65	-0.1
3,970,047	+		HSERO_RS17315	0.68	-0.1
3,970,160	+		HSERO_RS17315	0.71	-0.7
3,970,181	+		HSERO_RS17315	0.71	-1.6
3,970,181	+		HSERO_RS17315	0.71	-0.1
3,970,189	-		HSERO_RS17315	0.71	-0.1
3,970,240	+		HSERO_RS17315	0.73	-1.2
3,970,251	+		HSERO_RS17315	0.73	-0.1
3,970,259	-		HSERO_RS17315	0.73	-0.3
3,970,496	-		HSERO_RS17315	0.79	+0.5
3,970,498	+		HSERO_RS17315	0.79	-0.5
3,970,612	+		HSERO_RS17315	0.82	-0.0
3,970,633	-		HSERO_RS17315	0.82	-0.2
3,970,662	+		HSERO_RS17315	0.83	+0.3
3,970,663	-		HSERO_RS17315	0.83	+0.6
3,970,694	+		HSERO_RS17315	0.84	-0.8
3,970,752	+		HSERO_RS17315	0.85	-0.1
3,970,752	+		HSERO_RS17315	0.85	+0.8
3,970,817	+		HSERO_RS17315	0.87	-0.1
3,970,825	-		HSERO_RS17315	0.87	+0.6
3,970,895	+		HSERO_RS17315	0.89	-0.5
3,970,895	+		HSERO_RS17315	0.89	+0.2
3,970,895	+		HSERO_RS17315	0.89	-0.3
3,970,895	+		HSERO_RS17315	0.89	+0.1
3,970,895	+		HSERO_RS17315	0.89	-0.7
3,970,903	-		HSERO_RS17315	0.89	+0.5
3,970,903	-				+1.0
3,970,903	-		HSERO_RS17315	0.89	+0.4
3,970,903	-		HSERO_RS17315	0.89	+0.2
3,970,923	+		HSERO_RS17315	0.90	+0.5
3,971,014	-				-3.2
3,971,046	+				+0.3
3,971,054	-				+0.2
3,971,203	-				+0.5
3,971,357	+				-0.7
3,971,527	-				-1.4