Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14570

Experiment: Sisomicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.125 mg/ml
3,299,778	-				-0.2
3,299,778	-				+0.5
3,299,797	-				+0.1
3,299,797	-				-0.6
3,299,797	-				+1.2
3,299,797	-				-1.4
3,299,845	+				-0.2
3,299,902	+		HSERO_RS14565	0.13	+1.1
3,299,927	-		HSERO_RS14565	0.16	+2.2
3,299,965	-		HSERO_RS14565	0.20	+0.6
3,300,019	+		HSERO_RS14565	0.26	+0.7
3,300,166	-		HSERO_RS14565	0.41	+1.7
3,300,169	+		HSERO_RS14565	0.42	+0.5
3,300,177	-				-0.8
3,300,249	-		HSERO_RS14565	0.50	+1.8
3,300,249	-		HSERO_RS14565	0.50	-0.1
3,300,249	-		HSERO_RS14565	0.50	-0.9
3,300,287	+		HSERO_RS14565	0.54	+0.7
3,300,287	+		HSERO_RS14565	0.54	-1.4
3,300,295	-		HSERO_RS14565	0.55	-0.3
3,300,295	-		HSERO_RS14565	0.55	-0.8
3,300,344	+		HSERO_RS14565	0.60	-0.3
3,300,344	+		HSERO_RS14565	0.60	+0.1
3,300,352	-		HSERO_RS14565	0.61	-0.4
3,300,399	+		HSERO_RS14565	0.66	+2.3
3,300,407	+		HSERO_RS14565	0.67	+0.5
3,300,437	-		HSERO_RS14565	0.70	+0.7
3,300,444	+		HSERO_RS14565	0.71	+1.6
3,300,444	+		HSERO_RS14565	0.71	-0.0
3,300,444	+		HSERO_RS14565	0.71	+0.6
3,300,452	-		HSERO_RS14565	0.72	-2.2
3,300,452	-		HSERO_RS14565	0.72	+0.3
3,300,452	-		HSERO_RS14565	0.72	+1.1
3,300,480	-		HSERO_RS14565	0.75	+0.8
3,300,552	+		HSERO_RS14565	0.83	-1.3
3,300,553	+		HSERO_RS14565	0.83	-1.8
3,300,663	+				-2.9
3,300,720	+				-0.5
3,300,728	-				+1.2
3,300,788	+		HSERO_RS14570	0.29	-1.4
3,300,788	+		HSERO_RS14570	0.29	-1.4
3,300,791	-		HSERO_RS14570	0.30	-1.0
3,300,793	+		HSERO_RS14570	0.31	-0.6
3,300,793	+		HSERO_RS14570	0.31	-0.5
3,300,796	-		HSERO_RS14570	0.32	-1.1
3,300,822	-		HSERO_RS14570	0.41	-1.6
3,300,829	+				+1.6
3,300,829	+		HSERO_RS14570	0.43	-3.2
3,300,831	+		HSERO_RS14570	0.44	-0.8
3,300,833	-		HSERO_RS14570	0.44	-3.5
3,300,837	-		HSERO_RS14570	0.46	+1.1
3,300,839	-		HSERO_RS14570	0.46	-1.4
3,300,915	-		HSERO_RS14570	0.73	-2.3
3,300,951	-		HSERO_RS14570	0.85	-0.8
3,300,955	+		HSERO_RS14570	0.86	-3.5
3,300,955	+		HSERO_RS14570	0.86	-2.6
3,300,955	+		HSERO_RS14570	0.86	-0.4
3,300,955	+		HSERO_RS14570	0.86	-2.7
3,300,955	+		HSERO_RS14570	0.86	-3.0
3,300,955	+		HSERO_RS14570	0.86	-3.2
3,300,963	-		HSERO_RS14570	0.89	-1.0
3,300,963	-		HSERO_RS14570	0.89	-1.2
3,300,963	-		HSERO_RS14570	0.89	-1.8
3,300,963	-		HSERO_RS14570	0.89	-1.0
3,300,968	-				+0.0
3,301,012	+				+0.2
3,301,020	-				-0.8
3,301,020	-				+1.8
3,301,022	+				+0.0
3,301,031	-				+0.7
3,301,031	-				+0.4
3,301,031	-				-0.9
3,301,090	+		HSERO_RS14575	0.22	+1.2
3,301,098	-		HSERO_RS14575	0.25	-0.2
3,301,100	-		HSERO_RS14575	0.26	+0.7
3,301,169	+		HSERO_RS14575	0.56	+1.3
3,301,177	-		HSERO_RS14575	0.59	-0.8
3,301,249	+				-1.1
3,301,257	-				+0.2
3,301,259	+				-1.0
3,301,259	-				+0.4
3,301,374	+				+1.6
3,301,374	+				+0.1
3,301,382	-				+1.7
3,301,382	-				+0.4
3,301,382	-				-0.4
3,301,382	-				-2.3
3,301,382	-				-1.2
3,301,528	+				-1.4
3,301,565	-				+0.7
3,301,570	+				-1.5
3,301,670	-				+0.4
3,301,733	+				+0.3
3,301,793	+				-2.3
3,301,865	-				+0.2
3,301,921	+				+2.0
3,301,953	+				+0.1
3,301,987	+				-0.3