Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13590

Experiment: Sisomicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.125 mg/ml
3,084,478	-		HSERO_RS13585	0.11	-0.2
3,084,560	-		HSERO_RS13585	0.19	-2.4
3,084,771	+		HSERO_RS13585	0.41	-1.7
3,084,839	+		HSERO_RS13585	0.47	+1.0
3,084,851	+		HSERO_RS13585	0.49	+0.1
3,085,057	-		HSERO_RS13585	0.69	-1.0
3,085,077	-		HSERO_RS13585	0.72	+0.5
3,085,181	+				+3.6
3,085,341	-				-0.8
3,085,783	-		HSERO_RS13590	0.41	+0.7
3,085,827	-		HSERO_RS13590	0.46	-0.0
3,086,040	+		HSERO_RS13590	0.69	+2.7
3,086,076	-		HSERO_RS13590	0.73	+1.2
3,086,247	-				+0.5
3,086,514	-		HSERO_RS13595	0.22	-3.2
3,086,596	+		HSERO_RS13595	0.39	-1.9
3,086,618	+		HSERO_RS13595	0.43	-1.0
3,086,646	-		HSERO_RS13595	0.49	+0.6
3,086,653	+		HSERO_RS13595	0.50	+1.5
3,086,661	-		HSERO_RS13595	0.52	-0.2
3,086,741	+		HSERO_RS13595	0.68	+0.5
3,086,794	-		HSERO_RS13595	0.79	+0.4
3,086,893	-				+0.7
3,086,895	+				+0.3
3,086,955	+				+0.7
3,086,955	+				+0.3
3,086,960	+		HSERO_RS13600	0.10	+0.2
3,086,997	+		HSERO_RS13600	0.16	-0.5
3,087,051	+		HSERO_RS13600	0.25	+0.4
3,087,051	+		HSERO_RS13600	0.25	-0.9
3,087,051	+		HSERO_RS13600	0.25	-2.7
3,087,051	+		HSERO_RS13600	0.25	+0.4
3,087,059	-		HSERO_RS13600	0.26	-0.8
3,087,070	+		HSERO_RS13600	0.28	+1.0
3,087,070	+		HSERO_RS13600	0.28	-0.2
3,087,070	+		HSERO_RS13600	0.28	-1.1
3,087,078	-		HSERO_RS13600	0.29	+0.1
3,087,080	+		HSERO_RS13600	0.29	+1.9
3,087,090	-		HSERO_RS13600	0.31	-0.2
3,087,090	-		HSERO_RS13600	0.31	+0.1
3,087,095	+		HSERO_RS13600	0.31	+0.3
3,087,115	-		HSERO_RS13600	0.35	-0.1
3,087,174	-		HSERO_RS13600	0.44	+0.4
3,087,174	-		HSERO_RS13600	0.44	-0.2
3,087,174	-		HSERO_RS13600	0.44	+0.6
3,087,192	+		HSERO_RS13600	0.47	+0.3
3,087,197	+		HSERO_RS13600	0.47	+0.6
3,087,200	-		HSERO_RS13600	0.48	+0.8
3,087,200	-		HSERO_RS13600	0.48	-1.0
3,087,202	+		HSERO_RS13600	0.48	+0.0
3,087,256	-		HSERO_RS13600	0.57	-1.4
3,087,317	+		HSERO_RS13600	0.66	+0.9