Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12595

Experiment: Sisomicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.125 mg/ml
2,872,565	+		HSERO_RS12590	0.43	+0.8
2,872,889	-		HSERO_RS12590	0.66	-2.6
2,872,891	+				-0.4
2,873,169	-		HSERO_RS12590	0.87	+0.3
2,873,184	+		HSERO_RS12590	0.88	-1.5
2,873,308	+				+0.2
2,873,316	-				+0.4
2,873,335	-				+0.2
2,873,357	+				-0.4
2,873,587	-				-1.5
2,873,639	+				+1.6
2,873,954	-		HSERO_RS12595	0.41	+0.5
2,874,024	-		HSERO_RS12595	0.48	+0.1
2,874,088	+		HSERO_RS12595	0.54	-0.3
2,874,096	-		HSERO_RS12595	0.55	-1.2
2,874,245	+		HSERO_RS12595	0.70	-0.2
2,874,275	-		HSERO_RS12595	0.73	-0.5
2,874,287	+		HSERO_RS12595	0.74	-0.3
2,874,316	-		HSERO_RS12595	0.77	+0.2
2,874,345	-		HSERO_RS12595	0.80	+2.2
2,874,398	-		HSERO_RS12595	0.85	-0.3
2,874,445	+				-0.1
2,874,667	-				-0.2
2,874,733	-		HSERO_RS12600	0.12	+0.8
2,874,765	-		HSERO_RS12600	0.15	-1.0
2,874,767	-		HSERO_RS12600	0.15	-2.6
2,874,901	-		HSERO_RS12600	0.27	+0.1
2,875,003	-		HSERO_RS12600	0.37	+0.7
2,875,140	+		HSERO_RS12600	0.50	+0.3
2,875,165	+		HSERO_RS12600	0.52	-0.4
2,875,165	+		HSERO_RS12600	0.52	+2.8
2,875,185	-				+1.6
2,875,393	+		HSERO_RS12600	0.73	+0.5
2,875,395	-		HSERO_RS12600	0.74	+1.0