Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11875

Experiment: Sisomicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.125 mg/ml
2,703,699	-		HSERO_RS11865	0.48	-1.2
2,703,779	-		HSERO_RS11865	0.71	+1.2
2,703,803	-		HSERO_RS11865	0.77	+0.7
2,703,842	+		HSERO_RS11865	0.88	-2.5
2,703,842	+		HSERO_RS11865	0.88	-0.0
2,703,842	+		HSERO_RS11865	0.88	+0.6
2,703,842	+		HSERO_RS11865	0.88	+0.6
2,703,866	-				+1.8
2,703,899	+				+0.2
2,703,938	+				-1.0
2,704,047	+				+1.8
2,704,047	+				+0.6
2,704,055	-				-0.7
2,704,071	+				-0.6
2,704,099	-				-0.6
2,704,231	-				-1.4
2,704,254	+				+2.6
2,704,328	+		HSERO_RS11870	0.13	-0.4
2,704,336	-		HSERO_RS11870	0.17	+1.0
2,704,336	-		HSERO_RS11870	0.17	-0.4
2,704,457	+		HSERO_RS11870	0.73	+1.1
2,704,466	+		HSERO_RS11870	0.77	+1.2
2,704,474	-		HSERO_RS11870	0.81	+0.1
2,704,503	+				-0.3
2,704,527	+				+0.4
2,704,553	-				+0.1
2,704,699	+				+2.0
2,704,733	-				+0.7
2,705,086	-				+1.6
2,705,479	-		HSERO_RS11875	0.34	+1.8
2,705,563	-		HSERO_RS11875	0.37	+0.8
2,705,974	+		HSERO_RS11875	0.53	-1.6
2,705,974	+		HSERO_RS11875	0.53	-0.8
2,706,142	-		HSERO_RS11875	0.60	-0.4
2,706,164	+		HSERO_RS11875	0.61	-1.5
2,706,164	+		HSERO_RS11875	0.61	-0.9
2,706,169	+		HSERO_RS11875	0.61	+0.2
2,706,172	-		HSERO_RS11875	0.61	-1.2
2,706,210	+		HSERO_RS11875	0.62	-1.4
2,706,215	+		HSERO_RS11875	0.63	+0.6
2,706,315	-		HSERO_RS11875	0.67	-2.4
2,706,543	+		HSERO_RS11875	0.75	+1.1
2,706,603	+		HSERO_RS11875	0.78	+0.8
2,706,611	-		HSERO_RS11875	0.78	+1.4
2,706,780	+		HSERO_RS11875	0.85	-2.4
2,706,780	+		HSERO_RS11875	0.85	+0.2
2,706,808	-				+0.6
2,706,839	+		HSERO_RS11875	0.87	-1.7
2,706,884	-		HSERO_RS11875	0.89	+0.5
2,707,031	-				-2.2
2,707,067	+				-0.2
2,707,145	+				-2.3
2,707,194	-				+0.3
2,707,201	-				-1.5
2,707,416	+		HSERO_RS11880	0.81	-0.2
2,707,424	-		HSERO_RS11880	0.86	-2.0
2,707,500	+				-0.3
2,707,552	+				+0.6
2,707,849	-		HSERO_RS11885	0.48	+1.0
2,708,140	+				+1.6