Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09360

Experiment: Sisomicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.125 mg/ml
2,126,100	+				+0.2
2,126,108	-				+0.4
2,126,433	+				+0.5
2,126,584	+		HSERO_RS09355	0.25	-1.5
2,126,784	-				-2.4
2,126,879	+				-0.3
2,126,924	+				-0.3
2,127,044	+				+1.9
2,127,169	+		HSERO_RS09360	0.14	+1.3
2,127,380	+		HSERO_RS09360	0.46	+0.7
2,127,537	+		HSERO_RS09360	0.70	-0.3
2,127,556	+		HSERO_RS09360	0.73	+0.0
2,127,727	+				+1.4
2,127,841	-		HSERO_RS09365	0.12	+1.2
2,127,993	+		HSERO_RS09365	0.62	+1.1
2,128,001	-		HSERO_RS09365	0.65	+0.2
2,128,001	-		HSERO_RS09365	0.65	+0.5
2,128,001	-		HSERO_RS09365	0.65	+0.7
2,128,047	+		HSERO_RS09365	0.80	+0.5
2,128,137	-				+1.0
2,128,233	+		HSERO_RS09370	0.11	+0.9
2,128,241	-		HSERO_RS09370	0.13	-2.1
2,128,359	-		HSERO_RS09370	0.42	-0.4
2,128,453	+				+2.6
2,128,543	-		HSERO_RS09370	0.88	-1.0
2,128,546	+		HSERO_RS09370	0.89	-4.1
2,128,618	-				-0.7
2,128,689	+				-1.2
2,128,696	-				-1.6