Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS06645 and HSERO_RS06650 are separated by 23 nucleotides HSERO_RS06650 and HSERO_RS06655 overlap by 2 nucleotides HSERO_RS06655 and HSERO_RS06660 overlap by 11 nucleotides HSERO_RS06660 and HSERO_RS06665 are separated by 552 nucleotides
HSERO_RS06645: HSERO_RS06645 - aldehyde dehydrogenase, at 1,510,454 to 1,512,733
_RS06645
HSERO_RS06650: HSERO_RS06650 - MarR family transcriptional regulator, at 1,512,757 to 1,513,197
_RS06650
HSERO_RS06655: HSERO_RS06655 - hypothetical protein, at 1,513,196 to 1,513,426
_RS06655
HSERO_RS06660: HSERO_RS06660 - flavin reductase, at 1,513,416 to 1,514,030
_RS06660
HSERO_RS06665: HSERO_RS06665 - diguanylate cyclase, at 1,514,583 to 1,516,118
_RS06665
Position (kb) 1513
1514
1515 Strain fitness (log2 ratio) -2
-1
0
1 at 1512.626 kb on + strand at 1512.928 kb on - strand, within HSERO_RS06650 at 1512.962 kb on - strand, within HSERO_RS06650 at 1513.066 kb on - strand, within HSERO_RS06650 at 1513.066 kb on - strand, within HSERO_RS06650 at 1513.112 kb on + strand, within HSERO_RS06650 at 1513.190 kb on - strand at 1513.250 kb on + strand, within HSERO_RS06655 at 1513.308 kb on - strand, within HSERO_RS06655 at 1513.436 kb on + strand at 1513.436 kb on + strand at 1513.444 kb on - strand at 1513.624 kb on - strand, within HSERO_RS06660 at 1513.694 kb on + strand, within HSERO_RS06660 at 1514.071 kb on + strand at 1514.751 kb on + strand, within HSERO_RS06665 at 1514.774 kb on - strand, within HSERO_RS06665 at 1514.781 kb on + strand, within HSERO_RS06665 at 1514.807 kb on + strand, within HSERO_RS06665 at 1514.871 kb on - strand, within HSERO_RS06665 at 1514.873 kb on - strand, within HSERO_RS06665 at 1514.976 kb on - strand, within HSERO_RS06665
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 1,512,626 + +0.2 1,512,928 - HSERO_RS06650 0.39 -0.7 1,512,962 - HSERO_RS06650 0.46 -0.5 1,513,066 - HSERO_RS06650 0.70 +1.6 1,513,066 - HSERO_RS06650 0.70 +0.2 1,513,112 + HSERO_RS06650 0.80 -1.1 1,513,190 - +0.4 1,513,250 + HSERO_RS06655 0.23 +1.2 1,513,308 - HSERO_RS06655 0.48 -1.2 1,513,436 + +0.3 1,513,436 + -0.9 1,513,444 - -1.5 1,513,624 - HSERO_RS06660 0.34 -1.0 1,513,694 + HSERO_RS06660 0.45 -1.1 1,514,071 + +0.3 1,514,751 + HSERO_RS06665 0.11 -0.7 1,514,774 - HSERO_RS06665 0.12 -2.7 1,514,781 + HSERO_RS06665 0.13 +0.9 1,514,807 + HSERO_RS06665 0.15 +1.0 1,514,871 - HSERO_RS06665 0.19 +0.6 1,514,873 - HSERO_RS06665 0.19 -0.9 1,514,976 - HSERO_RS06665 0.26 +0.0
Or see this region's nucleotide sequence