Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05250

Experiment: Sisomicin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.125 mg/ml
1,161,115	+		HSERO_RS05240	0.46	+0.1
1,161,234	+		HSERO_RS05240	0.62	+0.9
1,161,245	+		HSERO_RS05240	0.63	-0.5
1,161,411	-		HSERO_RS05240	0.84	+0.9
1,161,719	+		HSERO_RS05245	0.50	-0.1
1,161,782	+		HSERO_RS05245	0.67	+0.2
1,161,850	-		HSERO_RS05245	0.86	-0.2
1,161,976	+				+0.0
1,162,054	-				-0.6
1,162,445	-		HSERO_RS05250	0.25	-1.4
1,162,586	+		HSERO_RS05250	0.34	-0.2
1,162,613	-		HSERO_RS05250	0.35	-0.8
1,162,694	-		HSERO_RS05250	0.41	+0.4
1,162,698	+		HSERO_RS05250	0.41	-1.5
1,162,715	+		HSERO_RS05250	0.42	+1.6
1,162,889	+		HSERO_RS05250	0.53	+0.8
1,162,960	+		HSERO_RS05250	0.58	-0.2
1,163,049	-		HSERO_RS05250	0.63	-0.1
1,163,171	+		HSERO_RS05250	0.71	-0.8
1,163,174	-		HSERO_RS05250	0.71	+0.0
1,163,459	-		HSERO_RS05250	0.90	+0.0
1,163,459	-		HSERO_RS05250	0.90	-3.7
1,163,474	+				+0.2
1,163,721	+				-1.2
1,163,729	-				+1.4
1,163,776	-		HSERO_RS05255	0.11	-2.3
1,163,834	+		HSERO_RS05255	0.17	+1.3
1,163,944	-		HSERO_RS05255	0.27	+0.0
1,164,084	-		HSERO_RS05255	0.41	+0.1
1,164,121	+				+0.0
1,164,129	-		HSERO_RS05255	0.45	-0.1
1,164,213	+		HSERO_RS05255	0.53	-2.6
1,164,334	-		HSERO_RS05255	0.65	-1.6
1,164,336	+		HSERO_RS05255	0.65	-0.7
1,164,582	-		HSERO_RS05255	0.88	+1.0