Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04195 and HSERO_RS04200 are separated by 447 nucleotides HSERO_RS04200 and HSERO_RS04205 are separated by 345 nucleotides
HSERO_RS04195: HSERO_RS04195 - methyl-accepting chemotaxis protein, at 918,591 to 920,564
_RS04195
HSERO_RS04200: HSERO_RS04200 - diguanylate cyclase, at 921,012 to 923,954
_RS04200
HSERO_RS04205: HSERO_RS04205 - membrane protein, at 924,300 to 924,962
_RS04205
Position (kb) 921
922
923
924 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 920.286 kb on - strand, within HSERO_RS04195 at 920.329 kb on + strand, within HSERO_RS04195 at 920.357 kb on - strand at 920.407 kb on - strand at 920.535 kb on + strand at 920.536 kb on - strand at 920.630 kb on - strand at 920.753 kb on - strand at 920.907 kb on + strand at 920.917 kb on + strand at 921.053 kb on - strand at 921.077 kb on + strand at 921.180 kb on + strand at 921.201 kb on + strand at 921.209 kb on - strand at 921.278 kb on - strand at 921.485 kb on + strand, within HSERO_RS04200 at 921.536 kb on + strand, within HSERO_RS04200 at 921.837 kb on - strand, within HSERO_RS04200 at 921.861 kb on + strand, within HSERO_RS04200 at 921.869 kb on - strand, within HSERO_RS04200 at 921.908 kb on + strand, within HSERO_RS04200 at 921.927 kb on - strand, within HSERO_RS04200 at 922.006 kb on + strand, within HSERO_RS04200 at 922.014 kb on - strand, within HSERO_RS04200 at 922.023 kb on - strand, within HSERO_RS04200 at 922.069 kb on - strand, within HSERO_RS04200 at 922.102 kb on + strand, within HSERO_RS04200 at 922.151 kb on + strand, within HSERO_RS04200 at 922.159 kb on - strand, within HSERO_RS04200 at 922.213 kb on + strand, within HSERO_RS04200 at 922.330 kb on + strand, within HSERO_RS04200 at 922.351 kb on - strand, within HSERO_RS04200 at 922.364 kb on + strand, within HSERO_RS04200 at 922.385 kb on - strand, within HSERO_RS04200 at 922.385 kb on - strand, within HSERO_RS04200 at 922.513 kb on + strand, within HSERO_RS04200 at 922.688 kb on + strand, within HSERO_RS04200 at 922.796 kb on + strand, within HSERO_RS04200 at 922.881 kb on + strand, within HSERO_RS04200 at 922.951 kb on - strand, within HSERO_RS04200 at 923.187 kb on + strand, within HSERO_RS04200 at 923.251 kb on - strand, within HSERO_RS04200 at 923.324 kb on + strand, within HSERO_RS04200 at 923.332 kb on - strand, within HSERO_RS04200 at 923.724 kb on + strand at 923.750 kb on + strand at 923.826 kb on - strand at 923.943 kb on - strand at 923.994 kb on + strand at 924.003 kb on - strand at 924.096 kb on + strand at 924.296 kb on - strand at 924.359 kb on + strand at 924.363 kb on + strand at 924.380 kb on + strand, within HSERO_RS04205 at 924.403 kb on - strand at 924.588 kb on + strand, within HSERO_RS04205 at 924.743 kb on - strand, within HSERO_RS04205 at 924.761 kb on + strand, within HSERO_RS04205 at 924.782 kb on + strand, within HSERO_RS04205
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 920,286 - HSERO_RS04195 0.86 -1.5 920,329 + HSERO_RS04195 0.88 +0.3 920,357 - +0.6 920,407 - +0.8 920,535 + -2.3 920,536 - +0.5 920,630 - +1.0 920,753 - -1.4 920,907 + +0.0 920,917 + +0.5 921,053 - -1.3 921,077 + -0.8 921,180 + -2.5 921,201 + -0.9 921,209 - -0.6 921,278 - +0.2 921,485 + HSERO_RS04200 0.16 -0.7 921,536 + HSERO_RS04200 0.18 +0.3 921,837 - HSERO_RS04200 0.28 -1.8 921,861 + HSERO_RS04200 0.29 -2.2 921,869 - HSERO_RS04200 0.29 -0.0 921,908 + HSERO_RS04200 0.30 +0.9 921,927 - HSERO_RS04200 0.31 +0.3 922,006 + HSERO_RS04200 0.34 +1.8 922,014 - HSERO_RS04200 0.34 -0.3 922,023 - HSERO_RS04200 0.34 -1.0 922,069 - HSERO_RS04200 0.36 -0.0 922,102 + HSERO_RS04200 0.37 -0.8 922,151 + HSERO_RS04200 0.39 -0.2 922,159 - HSERO_RS04200 0.39 -1.4 922,213 + HSERO_RS04200 0.41 +1.0 922,330 + HSERO_RS04200 0.45 +1.8 922,351 - HSERO_RS04200 0.45 -0.3 922,364 + HSERO_RS04200 0.46 +0.6 922,385 - HSERO_RS04200 0.47 +0.3 922,385 - HSERO_RS04200 0.47 +0.5 922,513 + HSERO_RS04200 0.51 -0.5 922,688 + HSERO_RS04200 0.57 -0.7 922,796 + HSERO_RS04200 0.61 -0.1 922,881 + HSERO_RS04200 0.64 -0.4 922,951 - HSERO_RS04200 0.66 +0.0 923,187 + HSERO_RS04200 0.74 +0.5 923,251 - HSERO_RS04200 0.76 +0.2 923,324 + HSERO_RS04200 0.79 +0.5 923,332 - HSERO_RS04200 0.79 +0.7 923,724 + +0.9 923,750 + -2.0 923,826 - +1.0 923,943 - +0.2 923,994 + +0.1 924,003 - -1.7 924,096 + +0.2 924,296 - +1.3 924,359 + +0.5 924,363 + -1.9 924,380 + HSERO_RS04205 0.12 +0.8 924,403 - +2.9 924,588 + HSERO_RS04205 0.43 -0.0 924,743 - HSERO_RS04205 0.67 +0.6 924,761 + HSERO_RS04205 0.70 +0.9 924,782 + HSERO_RS04205 0.73 +0.3
Or see this region's nucleotide sequence