Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04075 and HSERO_RS04080 overlap by 20 nucleotides HSERO_RS04080 and HSERO_RS04085 are separated by 228 nucleotides
HSERO_RS04075: HSERO_RS04075 - type IV prepilin PilV protein, at 891,356 to 892,759
_RS04075
HSERO_RS04080: HSERO_RS04080 - invasion protein, at 892,740 to 893,237
_RS04080
HSERO_RS04085: HSERO_RS04085 - twitching motility protein PilT, at 893,466 to 894,563
_RS04085
Position (kb) 892
893
894 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 892.161 kb on + strand, within HSERO_RS04075 at 892.169 kb on - strand, within HSERO_RS04075 at 892.169 kb on - strand, within HSERO_RS04075 at 892.245 kb on + strand, within HSERO_RS04075 at 892.309 kb on - strand, within HSERO_RS04075 at 892.438 kb on + strand, within HSERO_RS04075 at 892.438 kb on + strand, within HSERO_RS04075 at 892.446 kb on - strand, within HSERO_RS04075 at 892.747 kb on + strand at 892.770 kb on - strand at 892.823 kb on + strand, within HSERO_RS04080 at 892.857 kb on + strand, within HSERO_RS04080 at 892.867 kb on + strand, within HSERO_RS04080 at 892.910 kb on + strand, within HSERO_RS04080 at 892.918 kb on - strand, within HSERO_RS04080 at 892.954 kb on - strand, within HSERO_RS04080 at 892.954 kb on - strand, within HSERO_RS04080 at 892.954 kb on - strand, within HSERO_RS04080 at 893.121 kb on + strand, within HSERO_RS04080 at 893.161 kb on + strand, within HSERO_RS04080 at 893.161 kb on + strand, within HSERO_RS04080 at 893.169 kb on - strand, within HSERO_RS04080 at 893.169 kb on - strand, within HSERO_RS04080 at 893.242 kb on - strand at 893.392 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 892,161 + HSERO_RS04075 0.57 -0.1 892,169 - HSERO_RS04075 0.58 -0.3 892,169 - HSERO_RS04075 0.58 -2.8 892,245 + HSERO_RS04075 0.63 +0.2 892,309 - HSERO_RS04075 0.68 +0.9 892,438 + HSERO_RS04075 0.77 -1.0 892,438 + HSERO_RS04075 0.77 +0.9 892,446 - HSERO_RS04075 0.78 +0.6 892,747 + -0.6 892,770 - +1.5 892,823 + HSERO_RS04080 0.17 -2.2 892,857 + HSERO_RS04080 0.23 -1.7 892,867 + HSERO_RS04080 0.26 -1.0 892,910 + HSERO_RS04080 0.34 +0.6 892,918 - HSERO_RS04080 0.36 -0.2 892,954 - HSERO_RS04080 0.43 -0.7 892,954 - HSERO_RS04080 0.43 -0.7 892,954 - HSERO_RS04080 0.43 +1.1 893,121 + HSERO_RS04080 0.77 +0.6 893,161 + HSERO_RS04080 0.85 -1.7 893,161 + HSERO_RS04080 0.85 +0.4 893,169 - HSERO_RS04080 0.86 +0.3 893,169 - HSERO_RS04080 0.86 +1.2 893,242 - +1.9 893,392 + +0.7
Or see this region's nucleotide sequence