Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03935 and HSERO_RS03940 are separated by 343 nucleotides HSERO_RS03940 and HSERO_RS03945 are separated by 149 nucleotides HSERO_RS03945 and HSERO_RS03950 are separated by 93 nucleotides
HSERO_RS03935: HSERO_RS03935 - type III secretion protein, at 864,941 to 867,028
_RS03935
HSERO_RS03940: HSERO_RS03940 - hypothetical protein, at 867,372 to 868,112
_RS03940
HSERO_RS03945: HSERO_RS03945 - hypothetical protein, at 868,262 to 868,645
_RS03945
HSERO_RS03950: HSERO_RS03950 - type III secretion HrpQ protein, at 868,739 to 869,773
_RS03950
Position (kb) 867
868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 866.497 kb on + strand, within HSERO_RS03935 at 866.512 kb on + strand, within HSERO_RS03935 at 866.520 kb on - strand, within HSERO_RS03935 at 866.532 kb on - strand, within HSERO_RS03935 at 866.609 kb on + strand, within HSERO_RS03935 at 866.690 kb on + strand, within HSERO_RS03935 at 866.775 kb on - strand, within HSERO_RS03935 at 866.957 kb on + strand at 866.992 kb on + strand at 867.264 kb on - strand at 867.264 kb on - strand at 867.322 kb on - strand at 867.412 kb on - strand at 867.551 kb on + strand, within HSERO_RS03940 at 867.668 kb on + strand, within HSERO_RS03940 at 867.894 kb on + strand, within HSERO_RS03940 at 867.914 kb on - strand, within HSERO_RS03940 at 868.066 kb on + strand at 868.072 kb on - strand at 868.099 kb on - strand at 868.106 kb on + strand at 868.737 kb on - strand at 868.836 kb on + strand at 868.849 kb on - strand, within HSERO_RS03950 at 868.870 kb on + strand, within HSERO_RS03950 at 868.905 kb on - strand, within HSERO_RS03950
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 866,497 + HSERO_RS03935 0.75 -0.2 866,512 + HSERO_RS03935 0.75 -1.2 866,520 - HSERO_RS03935 0.76 -0.2 866,532 - HSERO_RS03935 0.76 -1.0 866,609 + HSERO_RS03935 0.80 +0.5 866,690 + HSERO_RS03935 0.84 -0.4 866,775 - HSERO_RS03935 0.88 -2.2 866,957 + +0.2 866,992 + +0.8 867,264 - -2.0 867,264 - -0.1 867,322 - +0.6 867,412 - +0.3 867,551 + HSERO_RS03940 0.24 +1.9 867,668 + HSERO_RS03940 0.40 -0.0 867,894 + HSERO_RS03940 0.70 -1.0 867,914 - HSERO_RS03940 0.73 +0.9 868,066 + +2.2 868,072 - -0.2 868,099 - -0.1 868,106 + +0.5 868,737 - -2.8 868,836 + -0.8 868,849 - HSERO_RS03950 0.11 -0.8 868,870 + HSERO_RS03950 0.13 -0.4 868,905 - HSERO_RS03950 0.16 -0.7
Or see this region's nucleotide sequence