Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03920 and HSERO_RS03925 overlap by 4 nucleotides HSERO_RS03925 and HSERO_RS03930 overlap by 23 nucleotides HSERO_RS03930 and HSERO_RS03935 are separated by 46 nucleotides HSERO_RS03935 and HSERO_RS03940 are separated by 343 nucleotides
HSERO_RS03920: HSERO_RS03920 - hypothetical protein, at 863,839 to 864,165
_RS03920
HSERO_RS03925: HSERO_RS03925 - hypothetical protein, at 864,162 to 864,617
_RS03925
HSERO_RS03930: HSERO_RS03930 - hypothetical protein, at 864,595 to 864,894
_RS03930
HSERO_RS03935: HSERO_RS03935 - type III secretion protein, at 864,941 to 867,028
_RS03935
HSERO_RS03940: HSERO_RS03940 - hypothetical protein, at 867,372 to 868,112
_RS03940
Position (kb) 864
865
866
867
868 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 864.017 kb on + strand, within HSERO_RS03920 at 864.025 kb on - strand, within HSERO_RS03920 at 864.146 kb on + strand at 864.154 kb on - strand at 864.246 kb on - strand, within HSERO_RS03925 at 864.369 kb on + strand, within HSERO_RS03925 at 864.451 kb on + strand, within HSERO_RS03925 at 864.627 kb on + strand, within HSERO_RS03930 at 864.654 kb on + strand, within HSERO_RS03930 at 864.666 kb on + strand, within HSERO_RS03930 at 864.671 kb on + strand, within HSERO_RS03930 at 864.674 kb on - strand, within HSERO_RS03930 at 864.842 kb on + strand, within HSERO_RS03930 at 864.868 kb on + strand at 864.896 kb on - strand at 864.902 kb on + strand at 865.049 kb on + strand at 865.062 kb on - strand at 865.112 kb on - strand at 865.483 kb on + strand, within HSERO_RS03935 at 865.656 kb on - strand, within HSERO_RS03935 at 865.767 kb on - strand, within HSERO_RS03935 at 865.768 kb on - strand, within HSERO_RS03935 at 865.841 kb on - strand, within HSERO_RS03935 at 865.927 kb on + strand, within HSERO_RS03935 at 865.962 kb on + strand, within HSERO_RS03935 at 866.346 kb on - strand, within HSERO_RS03935 at 866.497 kb on + strand, within HSERO_RS03935 at 866.512 kb on + strand, within HSERO_RS03935 at 866.520 kb on - strand, within HSERO_RS03935 at 866.532 kb on - strand, within HSERO_RS03935 at 866.609 kb on + strand, within HSERO_RS03935 at 866.690 kb on + strand, within HSERO_RS03935 at 866.775 kb on - strand, within HSERO_RS03935 at 866.957 kb on + strand at 866.992 kb on + strand at 867.264 kb on - strand at 867.264 kb on - strand at 867.322 kb on - strand at 867.412 kb on - strand at 867.551 kb on + strand, within HSERO_RS03940 at 867.668 kb on + strand, within HSERO_RS03940 at 867.894 kb on + strand, within HSERO_RS03940 at 867.914 kb on - strand, within HSERO_RS03940
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 864,017 + HSERO_RS03920 0.54 -1.3 864,025 - HSERO_RS03920 0.57 +1.3 864,146 + +2.2 864,154 - -2.4 864,246 - HSERO_RS03925 0.18 -1.9 864,369 + HSERO_RS03925 0.45 -3.3 864,451 + HSERO_RS03925 0.63 -2.8 864,627 + HSERO_RS03930 0.11 -1.6 864,654 + HSERO_RS03930 0.20 -2.8 864,666 + HSERO_RS03930 0.24 -0.8 864,671 + HSERO_RS03930 0.25 -0.1 864,674 - HSERO_RS03930 0.26 -0.2 864,842 + HSERO_RS03930 0.82 +0.5 864,868 + -0.2 864,896 - -1.2 864,902 + +0.5 865,049 + +1.0 865,062 - -0.9 865,112 - +0.1 865,483 + HSERO_RS03935 0.26 -0.2 865,656 - HSERO_RS03935 0.34 -1.7 865,767 - HSERO_RS03935 0.40 +0.1 865,768 - HSERO_RS03935 0.40 -0.2 865,841 - HSERO_RS03935 0.43 +0.0 865,927 + HSERO_RS03935 0.47 +0.9 865,962 + HSERO_RS03935 0.49 -0.1 866,346 - HSERO_RS03935 0.67 +0.5 866,497 + HSERO_RS03935 0.75 -0.2 866,512 + HSERO_RS03935 0.75 -1.2 866,520 - HSERO_RS03935 0.76 -0.2 866,532 - HSERO_RS03935 0.76 -1.0 866,609 + HSERO_RS03935 0.80 +0.5 866,690 + HSERO_RS03935 0.84 -0.4 866,775 - HSERO_RS03935 0.88 -2.2 866,957 + +0.2 866,992 + +0.8 867,264 - -2.0 867,264 - -0.1 867,322 - +0.6 867,412 - +0.3 867,551 + HSERO_RS03940 0.24 +1.9 867,668 + HSERO_RS03940 0.40 -0.0 867,894 + HSERO_RS03940 0.70 -1.0 867,914 - HSERO_RS03940 0.73 +0.9
Or see this region's nucleotide sequence