Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03915 and HSERO_RS03920 are separated by 7 nucleotides HSERO_RS03920 and HSERO_RS03925 overlap by 4 nucleotides HSERO_RS03925 and HSERO_RS03930 overlap by 23 nucleotides HSERO_RS03930 and HSERO_RS03935 are separated by 46 nucleotides
HSERO_RS03915: HSERO_RS03915 - hypothetical protein, at 863,448 to 863,831
_RS03915
HSERO_RS03920: HSERO_RS03920 - hypothetical protein, at 863,839 to 864,165
_RS03920
HSERO_RS03925: HSERO_RS03925 - hypothetical protein, at 864,162 to 864,617
_RS03925
HSERO_RS03930: HSERO_RS03930 - hypothetical protein, at 864,595 to 864,894
_RS03930
HSERO_RS03935: HSERO_RS03935 - type III secretion protein, at 864,941 to 867,028
_RS03935
Position (kb) 864
865 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 863.815 kb on - strand at 864.017 kb on + strand, within HSERO_RS03920 at 864.025 kb on - strand, within HSERO_RS03920 at 864.146 kb on + strand at 864.154 kb on - strand at 864.246 kb on - strand, within HSERO_RS03925 at 864.369 kb on + strand, within HSERO_RS03925 at 864.451 kb on + strand, within HSERO_RS03925 at 864.627 kb on + strand, within HSERO_RS03930 at 864.654 kb on + strand, within HSERO_RS03930 at 864.666 kb on + strand, within HSERO_RS03930 at 864.671 kb on + strand, within HSERO_RS03930 at 864.674 kb on - strand, within HSERO_RS03930 at 864.842 kb on + strand, within HSERO_RS03930 at 864.868 kb on + strand at 864.896 kb on - strand at 864.902 kb on + strand at 865.049 kb on + strand at 865.062 kb on - strand at 865.112 kb on - strand at 865.483 kb on + strand, within HSERO_RS03935 at 865.656 kb on - strand, within HSERO_RS03935 at 865.767 kb on - strand, within HSERO_RS03935 at 865.768 kb on - strand, within HSERO_RS03935 at 865.841 kb on - strand, within HSERO_RS03935
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 863,815 - +0.8 864,017 + HSERO_RS03920 0.54 -1.3 864,025 - HSERO_RS03920 0.57 +1.3 864,146 + +2.2 864,154 - -2.4 864,246 - HSERO_RS03925 0.18 -1.9 864,369 + HSERO_RS03925 0.45 -3.3 864,451 + HSERO_RS03925 0.63 -2.8 864,627 + HSERO_RS03930 0.11 -1.6 864,654 + HSERO_RS03930 0.20 -2.8 864,666 + HSERO_RS03930 0.24 -0.8 864,671 + HSERO_RS03930 0.25 -0.1 864,674 - HSERO_RS03930 0.26 -0.2 864,842 + HSERO_RS03930 0.82 +0.5 864,868 + -0.2 864,896 - -1.2 864,902 + +0.5 865,049 + +1.0 865,062 - -0.9 865,112 - +0.1 865,483 + HSERO_RS03935 0.26 -0.2 865,656 - HSERO_RS03935 0.34 -1.7 865,767 - HSERO_RS03935 0.40 +0.1 865,768 - HSERO_RS03935 0.40 -0.2 865,841 - HSERO_RS03935 0.43 +0.0
Or see this region's nucleotide sequence