Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03855 and HSERO_RS03860 are separated by 97 nucleotides HSERO_RS03860 and HSERO_RS03865 are separated by 275 nucleotides HSERO_RS03865 and HSERO_RS03870 are separated by 280 nucleotides
HSERO_RS03855: HSERO_RS03855 - hypothetical protein, at 852,354 to 853,280
_RS03855
HSERO_RS03860: HSERO_RS03860 - hypothetical protein, at 853,378 to 853,935
_RS03860
HSERO_RS03865: HSERO_RS03865 - hypothetical protein, at 854,211 to 854,615
_RS03865
HSERO_RS03870: HSERO_RS03870 - hypothetical protein, at 854,896 to 855,240
_RS03870
Position (kb) 853
854 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 852.458 kb on + strand, within HSERO_RS03855 at 852.738 kb on + strand at 852.814 kb on - strand, within HSERO_RS03855 at 852.819 kb on - strand, within HSERO_RS03855 at 852.838 kb on - strand, within HSERO_RS03855 at 852.897 kb on + strand, within HSERO_RS03855 at 852.913 kb on + strand, within HSERO_RS03855 at 852.993 kb on - strand at 853.004 kb on - strand, within HSERO_RS03855 at 853.056 kb on - strand, within HSERO_RS03855 at 853.100 kb on + strand, within HSERO_RS03855 at 853.145 kb on - strand, within HSERO_RS03855 at 853.150 kb on - strand, within HSERO_RS03855 at 853.179 kb on + strand, within HSERO_RS03855 at 853.244 kb on - strand at 853.284 kb on - strand at 853.378 kb on + strand at 853.378 kb on + strand at 853.386 kb on - strand at 853.681 kb on + strand, within HSERO_RS03860 at 853.792 kb on - strand, within HSERO_RS03860 at 853.792 kb on - strand, within HSERO_RS03860 at 853.822 kb on - strand, within HSERO_RS03860 at 853.856 kb on - strand, within HSERO_RS03860 at 854.052 kb on + strand at 854.060 kb on - strand at 854.067 kb on - strand at 854.107 kb on + strand at 854.136 kb on - strand at 854.390 kb on + strand, within HSERO_RS03865 at 854.441 kb on - strand, within HSERO_RS03865 at 854.622 kb on - strand at 854.622 kb on - strand at 854.633 kb on + strand at 854.633 kb on + strand at 854.643 kb on - strand at 854.645 kb on + strand at 854.733 kb on - strand at 854.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 852,458 + HSERO_RS03855 0.11 +1.3 852,738 + +2.0 852,814 - HSERO_RS03855 0.50 +0.0 852,819 - HSERO_RS03855 0.50 -0.6 852,838 - HSERO_RS03855 0.52 -0.5 852,897 + HSERO_RS03855 0.59 -0.4 852,913 + HSERO_RS03855 0.60 -0.1 852,993 - -0.7 853,004 - HSERO_RS03855 0.70 -1.2 853,056 - HSERO_RS03855 0.76 -0.5 853,100 + HSERO_RS03855 0.80 -0.1 853,145 - HSERO_RS03855 0.85 +0.4 853,150 - HSERO_RS03855 0.86 -1.2 853,179 + HSERO_RS03855 0.89 -1.2 853,244 - +0.3 853,284 - +0.5 853,378 + -1.3 853,378 + +0.4 853,386 - +0.5 853,681 + HSERO_RS03860 0.54 +0.1 853,792 - HSERO_RS03860 0.74 +0.9 853,792 - HSERO_RS03860 0.74 +0.5 853,822 - HSERO_RS03860 0.80 +0.3 853,856 - HSERO_RS03860 0.86 +0.2 854,052 + -0.6 854,060 - +0.6 854,067 - +0.7 854,107 + +0.1 854,136 - +0.2 854,390 + HSERO_RS03865 0.44 -0.2 854,441 - HSERO_RS03865 0.57 -1.5 854,622 - +1.5 854,622 - -0.4 854,633 + +0.2 854,633 + -2.9 854,643 - -0.7 854,645 + +1.6 854,733 - +0.4 854,778 - +0.0
Or see this region's nucleotide sequence