Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03695 and HSERO_RS03700 are separated by 84 nucleotides HSERO_RS03700 and HSERO_RS03705 are separated by 11 nucleotides HSERO_RS03705 and HSERO_RS03710 are separated by 32 nucleotides HSERO_RS03710 and HSERO_RS03715 are separated by 142 nucleotides
HSERO_RS03695: HSERO_RS03695 - hypothetical protein, at 809,228 to 809,857
_RS03695
HSERO_RS03700: HSERO_RS03700 - type VI secretion protein, at 809,942 to 810,442
_RS03700
HSERO_RS03705: HSERO_RS03705 - EvpB family type VI secretion protein, at 810,454 to 811,941
_RS03705
HSERO_RS03710: HSERO_RS03710 - hypothetical protein, at 811,974 to 812,465
_RS03710
HSERO_RS03715: HSERO_RS03715 - type VI secretion protein, at 812,608 to 813,096
_RS03715
Position (kb) 810
811
812 Strain fitness (log2 ratio) -1
0
1
2 at 809.476 kb on - strand, within HSERO_RS03695 at 809.662 kb on - strand, within HSERO_RS03695 at 809.745 kb on - strand, within HSERO_RS03695 at 809.745 kb on - strand, within HSERO_RS03695 at 809.760 kb on - strand, within HSERO_RS03695 at 809.795 kb on + strand at 809.829 kb on + strand at 809.923 kb on - strand at 809.980 kb on + strand at 810.165 kb on - strand, within HSERO_RS03700 at 810.542 kb on - strand at 810.559 kb on + strand at 810.562 kb on - strand at 810.577 kb on - strand at 810.610 kb on - strand, within HSERO_RS03705 at 810.667 kb on + strand, within HSERO_RS03705 at 810.688 kb on + strand, within HSERO_RS03705 at 810.748 kb on + strand, within HSERO_RS03705 at 810.748 kb on + strand, within HSERO_RS03705 at 810.761 kb on - strand, within HSERO_RS03705 at 810.814 kb on + strand, within HSERO_RS03705 at 810.919 kb on + strand, within HSERO_RS03705 at 811.100 kb on - strand, within HSERO_RS03705 at 811.160 kb on + strand, within HSERO_RS03705 at 811.302 kb on - strand, within HSERO_RS03705 at 811.312 kb on + strand, within HSERO_RS03705 at 811.325 kb on - strand, within HSERO_RS03705 at 811.504 kb on - strand, within HSERO_RS03705 at 811.593 kb on + strand, within HSERO_RS03705 at 811.813 kb on - strand at 812.675 kb on - strand, within HSERO_RS03715 at 812.874 kb on - strand, within HSERO_RS03715 at 812.933 kb on + strand, within HSERO_RS03715
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 809,476 - HSERO_RS03695 0.39 +1.0 809,662 - HSERO_RS03695 0.69 -0.3 809,745 - HSERO_RS03695 0.82 +1.3 809,745 - HSERO_RS03695 0.82 -0.9 809,760 - HSERO_RS03695 0.84 +0.1 809,795 + -0.1 809,829 + +2.5 809,923 - +1.4 809,980 + -0.4 810,165 - HSERO_RS03700 0.45 +0.6 810,542 - +0.0 810,559 + +1.2 810,562 - +0.9 810,577 - +0.6 810,610 - HSERO_RS03705 0.10 +0.4 810,667 + HSERO_RS03705 0.14 +0.6 810,688 + HSERO_RS03705 0.16 +1.5 810,748 + HSERO_RS03705 0.20 +0.8 810,748 + HSERO_RS03705 0.20 +0.8 810,761 - HSERO_RS03705 0.21 +1.1 810,814 + HSERO_RS03705 0.24 +0.0 810,919 + HSERO_RS03705 0.31 +2.2 811,100 - HSERO_RS03705 0.43 +1.2 811,160 + HSERO_RS03705 0.47 +1.6 811,302 - HSERO_RS03705 0.57 +1.7 811,312 + HSERO_RS03705 0.58 -1.7 811,325 - HSERO_RS03705 0.59 +0.4 811,504 - HSERO_RS03705 0.71 -1.4 811,593 + HSERO_RS03705 0.77 +2.0 811,813 - +1.5 812,675 - HSERO_RS03715 0.14 +0.8 812,874 - HSERO_RS03715 0.54 +0.1 812,933 + HSERO_RS03715 0.66 +0.0
Or see this region's nucleotide sequence