Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03675 and HSERO_RS03680 are separated by 37 nucleotides HSERO_RS03680 and HSERO_RS03685 overlap by 4 nucleotides HSERO_RS03685 and HSERO_RS03690 are separated by 97 nucleotides
HSERO_RS03675: HSERO_RS03675 - type VI secretion protein, at 803,061 to 805,925
_RS03675
HSERO_RS03680: HSERO_RS03680 - type VI secretion system protein ImpK, at 805,963 to 806,754
_RS03680
HSERO_RS03685: HSERO_RS03685 - type VI secretion protein, at 806,751 to 808,097
_RS03685
HSERO_RS03690: HSERO_RS03690 - membrane protein, at 808,195 to 808,818
_RS03690
Position (kb) 806
807
808
809 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 805.903 kb on + strand at 805.913 kb on + strand at 805.966 kb on + strand at 805.969 kb on - strand at 805.969 kb on - strand at 805.969 kb on - strand at 805.991 kb on - strand at 806.070 kb on - strand, within HSERO_RS03680 at 806.070 kb on - strand, within HSERO_RS03680 at 806.539 kb on - strand, within HSERO_RS03680 at 806.641 kb on + strand, within HSERO_RS03680 at 806.905 kb on + strand, within HSERO_RS03685 at 807.029 kb on + strand, within HSERO_RS03685 at 807.252 kb on - strand, within HSERO_RS03685 at 807.353 kb on - strand, within HSERO_RS03685 at 807.402 kb on + strand, within HSERO_RS03685 at 807.402 kb on + strand, within HSERO_RS03685 at 807.548 kb on - strand, within HSERO_RS03685 at 807.565 kb on + strand, within HSERO_RS03685 at 807.581 kb on + strand, within HSERO_RS03685 at 807.651 kb on - strand at 807.851 kb on + strand, within HSERO_RS03685 at 807.905 kb on + strand, within HSERO_RS03685 at 807.913 kb on - strand at 807.913 kb on - strand, within HSERO_RS03685 at 807.920 kb on + strand, within HSERO_RS03685 at 807.922 kb on + strand, within HSERO_RS03685 at 808.069 kb on - strand at 808.278 kb on + strand, within HSERO_RS03690 at 808.300 kb on - strand, within HSERO_RS03690 at 808.457 kb on + strand, within HSERO_RS03690 at 808.466 kb on - strand, within HSERO_RS03690 at 808.482 kb on + strand, within HSERO_RS03690 at 808.487 kb on + strand, within HSERO_RS03690 at 808.487 kb on + strand, within HSERO_RS03690 at 808.490 kb on - strand, within HSERO_RS03690 at 808.495 kb on - strand, within HSERO_RS03690 at 808.500 kb on + strand, within HSERO_RS03690 at 808.558 kb on - strand, within HSERO_RS03690 at 808.607 kb on - strand, within HSERO_RS03690 at 808.618 kb on - strand, within HSERO_RS03690 at 808.618 kb on - strand, within HSERO_RS03690 at 808.623 kb on + strand, within HSERO_RS03690 at 808.623 kb on + strand, within HSERO_RS03690 at 808.631 kb on - strand, within HSERO_RS03690 at 808.631 kb on - strand, within HSERO_RS03690 at 808.631 kb on - strand, within HSERO_RS03690 at 808.638 kb on + strand, within HSERO_RS03690 at 808.650 kb on - strand, within HSERO_RS03690 at 808.650 kb on - strand, within HSERO_RS03690 at 808.652 kb on + strand, within HSERO_RS03690 at 808.665 kb on - strand, within HSERO_RS03690 at 808.828 kb on + strand at 808.828 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.836 kb on - strand at 808.836 kb on - strand at 808.841 kb on - strand at 808.841 kb on - strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.869 kb on + strand at 808.871 kb on + strand at 808.873 kb on - strand at 808.873 kb on - strand at 808.873 kb on - strand at 808.913 kb on - strand at 808.918 kb on + strand at 808.918 kb on - strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on - strand at 808.924 kb on - strand at 808.926 kb on + strand at 808.926 kb on + strand at 808.926 kb on + strand at 808.926 kb on + strand at 808.926 kb on + strand at 808.926 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.931 kb on + strand at 808.931 kb on - strand at 808.934 kb on - strand at 808.934 kb on - strand at 808.934 kb on - strand at 808.934 kb on - strand at 808.935 kb on + strand at 808.938 kb on + strand at 808.939 kb on - strand at 808.943 kb on + strand at 808.943 kb on + strand at 808.961 kb on - strand at 808.966 kb on - strand at 809.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 805,903 + -0.6 805,913 + +1.6 805,966 + +0.8 805,969 - -0.9 805,969 - -0.1 805,969 - -0.5 805,991 - +0.6 806,070 - HSERO_RS03680 0.14 +1.8 806,070 - HSERO_RS03680 0.14 -0.6 806,539 - HSERO_RS03680 0.73 +0.0 806,641 + HSERO_RS03680 0.86 +2.2 806,905 + HSERO_RS03685 0.11 -0.9 807,029 + HSERO_RS03685 0.21 +1.9 807,252 - HSERO_RS03685 0.37 +0.8 807,353 - HSERO_RS03685 0.45 +0.9 807,402 + HSERO_RS03685 0.48 +1.9 807,402 + HSERO_RS03685 0.48 +1.0 807,548 - HSERO_RS03685 0.59 +0.5 807,565 + HSERO_RS03685 0.60 -0.0 807,581 + HSERO_RS03685 0.62 +1.6 807,651 - +2.6 807,851 + HSERO_RS03685 0.82 +1.1 807,905 + HSERO_RS03685 0.86 +0.2 807,913 - +2.7 807,913 - HSERO_RS03685 0.86 -0.1 807,920 + HSERO_RS03685 0.87 +1.3 807,922 + HSERO_RS03685 0.87 +1.6 808,069 - +1.4 808,278 + HSERO_RS03690 0.13 +1.1 808,300 - HSERO_RS03690 0.17 +1.2 808,457 + HSERO_RS03690 0.42 +0.4 808,466 - HSERO_RS03690 0.43 +0.7 808,482 + HSERO_RS03690 0.46 +0.3 808,487 + HSERO_RS03690 0.47 +1.3 808,487 + HSERO_RS03690 0.47 +0.5 808,490 - HSERO_RS03690 0.47 +1.2 808,495 - HSERO_RS03690 0.48 +1.4 808,500 + HSERO_RS03690 0.49 +0.1 808,558 - HSERO_RS03690 0.58 +0.1 808,607 - HSERO_RS03690 0.66 +1.6 808,618 - HSERO_RS03690 0.68 -0.4 808,618 - HSERO_RS03690 0.68 -1.7 808,623 + HSERO_RS03690 0.69 +1.2 808,623 + HSERO_RS03690 0.69 +0.7 808,631 - HSERO_RS03690 0.70 +2.2 808,631 - HSERO_RS03690 0.70 +1.8 808,631 - HSERO_RS03690 0.70 +0.5 808,638 + HSERO_RS03690 0.71 +0.2 808,650 - HSERO_RS03690 0.73 -0.2 808,650 - HSERO_RS03690 0.73 +1.0 808,652 + HSERO_RS03690 0.73 -0.9 808,665 - HSERO_RS03690 0.75 +1.8 808,828 + +1.7 808,828 + -2.5 808,833 + +1.1 808,833 + -0.0 808,833 + +1.9 808,833 + +1.4 808,833 + +2.4 808,833 + +1.3 808,836 - +0.8 808,836 - +0.5 808,841 - +1.2 808,841 - -0.1 808,861 + -0.1 808,861 + +1.5 808,861 + +1.5 808,861 + -0.9 808,861 + +1.0 808,861 + +1.4 808,869 + +1.4 808,871 + +1.1 808,873 - -0.7 808,873 - +0.0 808,873 - +1.1 808,913 - -1.1 808,918 + +1.1 808,918 - +1.4 808,921 + +1.6 808,921 + -0.3 808,921 + +0.0 808,921 + +1.1 808,921 + +1.6 808,921 + +2.0 808,921 + +0.0 808,921 + +0.5 808,921 + -0.7 808,921 - +1.2 808,924 - +2.2 808,926 + +1.6 808,926 + +1.0 808,926 + +0.6 808,926 + +1.3 808,926 + +0.9 808,926 - +0.4 808,929 - +2.8 808,929 - -1.8 808,929 - +0.9 808,929 - +1.8 808,929 - +1.1 808,929 - +1.4 808,929 - +1.4 808,931 + +0.5 808,931 - +1.3 808,934 - +1.0 808,934 - +0.4 808,934 - +2.2 808,934 - +1.4 808,935 + +1.0 808,938 + +0.8 808,939 - +1.6 808,943 + +1.2 808,943 + +1.3 808,961 - +0.2 808,966 - +1.4 809,023 - +2.0
Or see this region's nucleotide sequence