Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03555 and HSERO_RS03560 are separated by 221 nucleotides HSERO_RS03560 and HSERO_RS03565 are separated by 39 nucleotides
HSERO_RS03555: HSERO_RS03555 - chloride channel protein, at 773,420 to 774,703
_RS03555
HSERO_RS03560: HSERO_RS03560 - TonB-denpendent receptor, at 774,925 to 777,054
_RS03560
HSERO_RS03565: HSERO_RS03565 - metal-dependent hydrolase, at 777,094 to 778,083
_RS03565
Position (kb) 774
775
776
777
778 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 773.977 kb on - strand, within HSERO_RS03555 at 774.175 kb on + strand, within HSERO_RS03555 at 774.358 kb on + strand, within HSERO_RS03555 at 774.910 kb on + strand at 774.960 kb on + strand at 775.034 kb on + strand at 775.051 kb on + strand at 775.070 kb on + strand at 775.070 kb on + strand at 775.073 kb on - strand at 775.172 kb on - strand, within HSERO_RS03560 at 775.184 kb on + strand, within HSERO_RS03560 at 775.184 kb on + strand, within HSERO_RS03560 at 775.439 kb on - strand, within HSERO_RS03560 at 775.543 kb on - strand at 775.565 kb on + strand, within HSERO_RS03560 at 775.571 kb on - strand, within HSERO_RS03560 at 775.686 kb on + strand, within HSERO_RS03560 at 775.745 kb on + strand, within HSERO_RS03560 at 775.831 kb on - strand, within HSERO_RS03560 at 776.034 kb on + strand, within HSERO_RS03560 at 776.044 kb on + strand, within HSERO_RS03560 at 776.450 kb on - strand, within HSERO_RS03560 at 776.650 kb on - strand, within HSERO_RS03560 at 776.751 kb on - strand, within HSERO_RS03560 at 776.757 kb on - strand, within HSERO_RS03560 at 776.979 kb on + strand at 776.995 kb on + strand at 777.179 kb on + strand at 777.344 kb on + strand, within HSERO_RS03565 at 777.419 kb on + strand, within HSERO_RS03565 at 777.438 kb on + strand, within HSERO_RS03565 at 777.439 kb on + strand, within HSERO_RS03565 at 777.506 kb on - strand, within HSERO_RS03565 at 777.650 kb on + strand, within HSERO_RS03565 at 777.864 kb on - strand, within HSERO_RS03565
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 773,977 - HSERO_RS03555 0.43 -0.1 774,175 + HSERO_RS03555 0.59 -1.7 774,358 + HSERO_RS03555 0.73 +0.8 774,910 + -0.6 774,960 + +1.1 775,034 + -0.2 775,051 + +0.3 775,070 + -0.2 775,070 + +0.2 775,073 - +0.6 775,172 - HSERO_RS03560 0.12 -4.3 775,184 + HSERO_RS03560 0.12 -0.1 775,184 + HSERO_RS03560 0.12 +2.2 775,439 - HSERO_RS03560 0.24 -0.2 775,543 - +3.2 775,565 + HSERO_RS03560 0.30 -2.0 775,571 - HSERO_RS03560 0.30 -0.5 775,686 + HSERO_RS03560 0.36 +1.6 775,745 + HSERO_RS03560 0.38 -0.8 775,831 - HSERO_RS03560 0.43 -0.9 776,034 + HSERO_RS03560 0.52 +0.8 776,044 + HSERO_RS03560 0.53 -1.5 776,450 - HSERO_RS03560 0.72 -1.2 776,650 - HSERO_RS03560 0.81 -0.9 776,751 - HSERO_RS03560 0.86 -0.1 776,757 - HSERO_RS03560 0.86 +1.3 776,979 + +1.2 776,995 + +0.7 777,179 + +0.6 777,344 + HSERO_RS03565 0.25 -1.3 777,419 + HSERO_RS03565 0.33 -0.4 777,438 + HSERO_RS03565 0.35 -1.6 777,439 + HSERO_RS03565 0.35 -1.1 777,506 - HSERO_RS03565 0.42 -1.1 777,650 + HSERO_RS03565 0.56 +0.1 777,864 - HSERO_RS03565 0.78 -2.7
Or see this region's nucleotide sequence