Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03545 and HSERO_RS03550 are separated by 201 nucleotides HSERO_RS03550 and HSERO_RS03555 are separated by 104 nucleotides HSERO_RS03555 and HSERO_RS03560 are separated by 221 nucleotides
HSERO_RS03545: HSERO_RS03545 - hypothetical protein, at 772,332 to 772,709
_RS03545
HSERO_RS03550: HSERO_RS03550 - glyoxalase I, at 772,911 to 773,315
_RS03550
HSERO_RS03555: HSERO_RS03555 - chloride channel protein, at 773,420 to 774,703
_RS03555
HSERO_RS03560: HSERO_RS03560 - TonB-denpendent receptor, at 774,925 to 777,054
_RS03560
Position (kb) 773
774
775 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 772.557 kb on + strand, within HSERO_RS03545 at 772.656 kb on - strand, within HSERO_RS03545 at 772.746 kb on - strand at 772.773 kb on - strand at 772.793 kb on + strand at 772.794 kb on + strand at 772.802 kb on - strand at 772.980 kb on - strand, within HSERO_RS03550 at 772.992 kb on - strand, within HSERO_RS03550 at 773.318 kb on - strand at 773.835 kb on + strand, within HSERO_RS03555 at 773.977 kb on - strand, within HSERO_RS03555 at 774.175 kb on + strand, within HSERO_RS03555 at 774.358 kb on + strand, within HSERO_RS03555 at 774.910 kb on + strand at 774.960 kb on + strand at 775.034 kb on + strand at 775.051 kb on + strand at 775.070 kb on + strand at 775.070 kb on + strand at 775.073 kb on - strand at 775.172 kb on - strand, within HSERO_RS03560 at 775.184 kb on + strand, within HSERO_RS03560 at 775.184 kb on + strand, within HSERO_RS03560 at 775.439 kb on - strand, within HSERO_RS03560 at 775.543 kb on - strand at 775.565 kb on + strand, within HSERO_RS03560 at 775.571 kb on - strand, within HSERO_RS03560 at 775.686 kb on + strand, within HSERO_RS03560
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 772,557 + HSERO_RS03545 0.60 -1.1 772,656 - HSERO_RS03545 0.86 -1.6 772,746 - -0.8 772,773 - -0.6 772,793 + -2.0 772,794 + -0.3 772,802 - -1.2 772,980 - HSERO_RS03550 0.17 +0.4 772,992 - HSERO_RS03550 0.20 -1.3 773,318 - -0.4 773,835 + HSERO_RS03555 0.32 -0.6 773,977 - HSERO_RS03555 0.43 -0.1 774,175 + HSERO_RS03555 0.59 -1.7 774,358 + HSERO_RS03555 0.73 +0.8 774,910 + -0.6 774,960 + +1.1 775,034 + -0.2 775,051 + +0.3 775,070 + -0.2 775,070 + +0.2 775,073 - +0.6 775,172 - HSERO_RS03560 0.12 -4.3 775,184 + HSERO_RS03560 0.12 -0.1 775,184 + HSERO_RS03560 0.12 +2.2 775,439 - HSERO_RS03560 0.24 -0.2 775,543 - +3.2 775,565 + HSERO_RS03560 0.30 -2.0 775,571 - HSERO_RS03560 0.30 -0.5 775,686 + HSERO_RS03560 0.36 +1.6
Or see this region's nucleotide sequence