Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02695 and HSERO_RS02700 are separated by 122 nucleotides HSERO_RS02700 and HSERO_RS02705 are separated by 49 nucleotides HSERO_RS02705 and HSERO_RS02710 are separated by 28 nucleotides
HSERO_RS02695: HSERO_RS02695 - major facilitator transporter, at 595,990 to 597,342
_RS02695
HSERO_RS02700: HSERO_RS02700 - hypothetical protein, at 597,465 to 597,680
_RS02700
HSERO_RS02705: HSERO_RS02705 - FAD-dependent oxidoreductase, at 597,730 to 599,499
_RS02705
HSERO_RS02710: HSERO_RS02710 - Zn-dependent hydrolase, at 599,528 to 600,487
_RS02710
Position (kb) 597
598
599
600 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 597.089 kb on + strand, within HSERO_RS02695 at 597.159 kb on + strand, within HSERO_RS02695 at 597.202 kb on + strand, within HSERO_RS02695 at 597.204 kb on + strand, within HSERO_RS02695 at 597.283 kb on - strand at 597.310 kb on - strand at 597.376 kb on + strand at 597.530 kb on - strand, within HSERO_RS02700 at 597.664 kb on - strand at 597.667 kb on + strand at 597.675 kb on - strand at 597.711 kb on + strand at 597.719 kb on - strand at 597.722 kb on + strand at 597.730 kb on - strand at 598.241 kb on + strand, within HSERO_RS02705 at 598.626 kb on - strand, within HSERO_RS02705 at 598.779 kb on - strand, within HSERO_RS02705 at 598.883 kb on - strand, within HSERO_RS02705 at 599.100 kb on - strand, within HSERO_RS02705 at 599.172 kb on - strand, within HSERO_RS02705 at 599.193 kb on - strand, within HSERO_RS02705 at 599.224 kb on - strand, within HSERO_RS02705 at 599.282 kb on - strand, within HSERO_RS02705 at 599.595 kb on + strand at 599.618 kb on + strand at 599.818 kb on + strand, within HSERO_RS02710 at 599.863 kb on + strand at 599.893 kb on + strand, within HSERO_RS02710 at 599.987 kb on + strand, within HSERO_RS02710 at 599.997 kb on + strand, within HSERO_RS02710 at 600.002 kb on + strand, within HSERO_RS02710 at 600.074 kb on + strand, within HSERO_RS02710 at 600.082 kb on - strand, within HSERO_RS02710 at 600.311 kb on + strand, within HSERO_RS02710 at 600.319 kb on - strand, within HSERO_RS02710 at 600.357 kb on - strand, within HSERO_RS02710 at 600.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 597,089 + HSERO_RS02695 0.81 -3.6 597,159 + HSERO_RS02695 0.86 +0.2 597,202 + HSERO_RS02695 0.90 -3.4 597,204 + HSERO_RS02695 0.90 -2.8 597,283 - -2.9 597,310 - +0.1 597,376 + -2.5 597,530 - HSERO_RS02700 0.30 -0.8 597,664 - -2.2 597,667 + +1.7 597,675 - +0.9 597,711 + -0.5 597,719 - +0.7 597,722 + +1.2 597,730 - -0.4 598,241 + HSERO_RS02705 0.29 -0.1 598,626 - HSERO_RS02705 0.51 -1.6 598,779 - HSERO_RS02705 0.59 +0.9 598,883 - HSERO_RS02705 0.65 -0.4 599,100 - HSERO_RS02705 0.77 +0.6 599,172 - HSERO_RS02705 0.81 -0.1 599,193 - HSERO_RS02705 0.83 +1.0 599,224 - HSERO_RS02705 0.84 -0.1 599,282 - HSERO_RS02705 0.88 +0.9 599,595 + +0.1 599,618 + +3.7 599,818 + HSERO_RS02710 0.30 +1.7 599,863 + +3.0 599,893 + HSERO_RS02710 0.38 +0.5 599,987 + HSERO_RS02710 0.48 +0.1 599,997 + HSERO_RS02710 0.49 -1.7 600,002 + HSERO_RS02710 0.49 +0.8 600,074 + HSERO_RS02710 0.57 +0.4 600,082 - HSERO_RS02710 0.58 +1.6 600,311 + HSERO_RS02710 0.82 +0.5 600,319 - HSERO_RS02710 0.82 +0.3 600,357 - HSERO_RS02710 0.86 -0.3 600,443 - -1.0
Or see this region's nucleotide sequence