Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02140 and HSERO_RS02145 are separated by 188 nucleotides HSERO_RS02145 and HSERO_RS02150 are separated by 236 nucleotides HSERO_RS02150 and HSERO_RS02155 are separated by 233 nucleotides HSERO_RS02155 and HSERO_RS02160 are separated by 108 nucleotides
HSERO_RS02140: HSERO_RS02140 - thiamine-phosphate synthase, at 466,601 to 467,233
_RS02140
HSERO_RS02145: HSERO_RS02145 - ferritin, at 467,422 to 467,916
_RS02145
HSERO_RS02150: HSERO_RS02150 - MFS transporter, at 468,153 to 469,328
_RS02150
HSERO_RS02155: HSERO_RS02155 - chorismate mutase, at 469,562 to 470,131
_RS02155
HSERO_RS02160: HSERO_RS02160 - DNA-dependent helicase, at 470,240 to 472,519
_RS02160
Position (kb) 468
469
470 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 467.172 kb on + strand at 467.210 kb on - strand at 467.264 kb on + strand at 467.264 kb on + strand at 467.264 kb on + strand at 467.348 kb on - strand at 467.808 kb on + strand, within HSERO_RS02145 at 467.923 kb on + strand at 467.931 kb on - strand at 467.953 kb on + strand at 467.955 kb on + strand at 467.961 kb on - strand at 467.963 kb on - strand at 467.963 kb on - strand at 467.963 kb on - strand at 468.104 kb on + strand at 468.151 kb on + strand at 468.170 kb on + strand at 468.236 kb on + strand at 468.250 kb on + strand at 468.404 kb on + strand, within HSERO_RS02150 at 468.419 kb on + strand, within HSERO_RS02150 at 468.424 kb on + strand, within HSERO_RS02150 at 468.622 kb on - strand, within HSERO_RS02150 at 468.627 kb on - strand, within HSERO_RS02150 at 468.685 kb on - strand, within HSERO_RS02150 at 468.686 kb on - strand, within HSERO_RS02150 at 468.715 kb on - strand, within HSERO_RS02150 at 468.842 kb on - strand, within HSERO_RS02150 at 468.842 kb on - strand, within HSERO_RS02150 at 468.859 kb on + strand, within HSERO_RS02150 at 468.877 kb on - strand at 469.051 kb on - strand, within HSERO_RS02150 at 469.051 kb on - strand, within HSERO_RS02150 at 469.162 kb on + strand, within HSERO_RS02150 at 469.214 kb on + strand at 469.627 kb on + strand, within HSERO_RS02155 at 469.750 kb on - strand, within HSERO_RS02155 at 469.843 kb on + strand, within HSERO_RS02155 at 469.999 kb on - strand, within HSERO_RS02155 at 470.170 kb on + strand at 470.193 kb on - strand at 470.193 kb on - strand at 470.254 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 467,172 + -0.7 467,210 - -0.6 467,264 + +0.2 467,264 + -2.0 467,264 + +0.2 467,348 - -1.4 467,808 + HSERO_RS02145 0.78 -4.4 467,923 + -5.0 467,931 - -2.4 467,953 + -2.7 467,955 + -2.3 467,961 - -3.7 467,963 - -4.2 467,963 - -0.1 467,963 - -0.7 468,104 + +0.2 468,151 + +0.2 468,170 + -0.3 468,236 + +0.5 468,250 + -0.0 468,404 + HSERO_RS02150 0.21 -2.2 468,419 + HSERO_RS02150 0.23 +0.7 468,424 + HSERO_RS02150 0.23 -0.1 468,622 - HSERO_RS02150 0.40 +0.4 468,627 - HSERO_RS02150 0.40 -0.1 468,685 - HSERO_RS02150 0.45 -2.1 468,686 - HSERO_RS02150 0.45 +0.0 468,715 - HSERO_RS02150 0.48 -0.2 468,842 - HSERO_RS02150 0.59 -0.0 468,842 - HSERO_RS02150 0.59 -0.2 468,859 + HSERO_RS02150 0.60 -1.4 468,877 - -0.6 469,051 - HSERO_RS02150 0.76 +0.6 469,051 - HSERO_RS02150 0.76 +0.5 469,162 + HSERO_RS02150 0.86 +0.8 469,214 + -2.0 469,627 + HSERO_RS02155 0.11 -0.5 469,750 - HSERO_RS02155 0.33 +0.5 469,843 + HSERO_RS02155 0.49 -0.8 469,999 - HSERO_RS02155 0.77 -0.5 470,170 + -0.6 470,193 - +2.6 470,193 - -0.4 470,254 + -3.9
Or see this region's nucleotide sequence