Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01955 and HSERO_RS01960 are separated by 7 nucleotides HSERO_RS01960 and HSERO_RS01965 are separated by 75 nucleotides
HSERO_RS01955: HSERO_RS01955 - methyl-accepting chemotaxis protein, at 428,446 to 430,149
_RS01955
HSERO_RS01960: HSERO_RS01960 - hypothetical protein, at 430,157 to 430,480
_RS01960
HSERO_RS01965: HSERO_RS01965 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 430,556 to 431,938
_RS01965
Position (kb) 430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 429.311 kb on + strand, within HSERO_RS01955 at 429.328 kb on + strand, within HSERO_RS01955 at 429.338 kb on - strand, within HSERO_RS01955 at 429.528 kb on + strand, within HSERO_RS01955 at 429.531 kb on + strand, within HSERO_RS01955 at 429.697 kb on + strand, within HSERO_RS01955 at 429.750 kb on - strand, within HSERO_RS01955 at 429.777 kb on + strand, within HSERO_RS01955 at 429.866 kb on + strand at 430.072 kb on - strand at 430.072 kb on - strand at 430.082 kb on - strand at 430.107 kb on + strand at 430.258 kb on - strand, within HSERO_RS01960 at 430.274 kb on + strand, within HSERO_RS01960 at 430.462 kb on + strand at 430.462 kb on + strand at 430.466 kb on - strand at 430.607 kb on - strand at 430.626 kb on + strand at 430.671 kb on - strand at 430.697 kb on + strand, within HSERO_RS01965 at 430.867 kb on + strand, within HSERO_RS01965 at 430.952 kb on + strand at 431.061 kb on + strand, within HSERO_RS01965 at 431.143 kb on + strand, within HSERO_RS01965 at 431.254 kb on - strand, within HSERO_RS01965 at 431.300 kb on - strand, within HSERO_RS01965 at 431.466 kb on + strand, within HSERO_RS01965
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 429,311 + HSERO_RS01955 0.51 -0.9 429,328 + HSERO_RS01955 0.52 +0.7 429,338 - HSERO_RS01955 0.52 -1.2 429,528 + HSERO_RS01955 0.63 -1.0 429,531 + HSERO_RS01955 0.64 +1.6 429,697 + HSERO_RS01955 0.73 +0.4 429,750 - HSERO_RS01955 0.77 -0.2 429,777 + HSERO_RS01955 0.78 +0.5 429,866 + +0.2 430,072 - +0.4 430,072 - +0.7 430,082 - +1.4 430,107 + -1.1 430,258 - HSERO_RS01960 0.31 +0.1 430,274 + HSERO_RS01960 0.36 -2.2 430,462 + +0.7 430,462 + -2.6 430,466 - +1.2 430,607 - -0.8 430,626 + -0.8 430,671 - -0.3 430,697 + HSERO_RS01965 0.10 -2.8 430,867 + HSERO_RS01965 0.22 +0.5 430,952 + +2.1 431,061 + HSERO_RS01965 0.37 -0.6 431,143 + HSERO_RS01965 0.42 +0.6 431,254 - HSERO_RS01965 0.50 -2.8 431,300 - HSERO_RS01965 0.54 -1.8 431,466 + HSERO_RS01965 0.66 +0.3
Or see this region's nucleotide sequence