Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01855 and HSERO_RS01860 are separated by 19 nucleotides HSERO_RS01860 and HSERO_RS01865 are separated by 1 nucleotides HSERO_RS01865 and HSERO_RS01870 are separated by 133 nucleotides
HSERO_RS01855: HSERO_RS01855 - myristoyl transferase, at 407,919 to 408,878
_RS01855
HSERO_RS01860: HSERO_RS01860 - sulfonate ABC transporter permease, at 408,898 to 409,719
_RS01860
HSERO_RS01865: HSERO_RS01865 - sulfonate ABC transporter ATP-binding protein, at 409,721 to 410,530
_RS01865
HSERO_RS01870: HSERO_RS01870 - ABC transporter permease, at 410,664 to 411,476
_RS01870
Position (kb) 408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 407.901 kb on + strand at 407.909 kb on - strand at 407.938 kb on + strand at 408.038 kb on + strand at 408.154 kb on - strand, within HSERO_RS01855 at 408.462 kb on + strand, within HSERO_RS01855 at 408.504 kb on + strand, within HSERO_RS01855 at 408.634 kb on + strand, within HSERO_RS01855 at 408.642 kb on - strand, within HSERO_RS01855 at 408.869 kb on - strand at 408.875 kb on - strand at 408.886 kb on + strand at 408.963 kb on + strand at 408.980 kb on - strand at 409.056 kb on + strand, within HSERO_RS01860 at 409.064 kb on - strand, within HSERO_RS01860 at 409.064 kb on - strand, within HSERO_RS01860 at 409.205 kb on + strand, within HSERO_RS01860 at 409.311 kb on - strand at 409.326 kb on + strand, within HSERO_RS01860 at 409.493 kb on - strand, within HSERO_RS01860 at 409.493 kb on - strand, within HSERO_RS01860 at 409.495 kb on - strand, within HSERO_RS01860 at 409.495 kb on - strand, within HSERO_RS01860 at 409.569 kb on - strand, within HSERO_RS01860 at 409.749 kb on + strand at 409.749 kb on + strand at 409.757 kb on - strand at 409.915 kb on - strand, within HSERO_RS01865 at 410.090 kb on + strand, within HSERO_RS01865 at 410.483 kb on - strand at 410.489 kb on + strand at 410.514 kb on - strand at 410.540 kb on + strand at 410.638 kb on + strand at 410.649 kb on + strand at 410.657 kb on - strand at 410.696 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 407,901 + -0.1 407,909 - -0.2 407,938 + +0.5 408,038 + +1.2 408,154 - HSERO_RS01855 0.24 -1.7 408,462 + HSERO_RS01855 0.57 -0.1 408,504 + HSERO_RS01855 0.61 +0.6 408,634 + HSERO_RS01855 0.74 -1.7 408,642 - HSERO_RS01855 0.75 -0.7 408,869 - -0.4 408,875 - -0.3 408,886 + -0.4 408,963 + -1.5 408,980 - +1.3 409,056 + HSERO_RS01860 0.19 +0.1 409,064 - HSERO_RS01860 0.20 +0.2 409,064 - HSERO_RS01860 0.20 +0.1 409,205 + HSERO_RS01860 0.37 +1.2 409,311 - +1.7 409,326 + HSERO_RS01860 0.52 -2.7 409,493 - HSERO_RS01860 0.72 -0.7 409,493 - HSERO_RS01860 0.72 +0.7 409,495 - HSERO_RS01860 0.73 -1.7 409,495 - HSERO_RS01860 0.73 -0.1 409,569 - HSERO_RS01860 0.82 -0.8 409,749 + -0.6 409,749 + -0.3 409,757 - -0.3 409,915 - HSERO_RS01865 0.24 +0.7 410,090 + HSERO_RS01865 0.46 -2.8 410,483 - -1.0 410,489 + +0.2 410,514 - -0.3 410,540 + +0.9 410,638 + +0.1 410,649 + +1.3 410,657 - +0.2 410,696 + -1.8
Or see this region's nucleotide sequence