Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01840 and HSERO_RS01845 overlap by 2 nucleotides HSERO_RS01845 and HSERO_RS01850 are separated by 381 nucleotides HSERO_RS01850 and HSERO_RS01855 are separated by 322 nucleotides
HSERO_RS01840: HSERO_RS01840 - hypothetical protein, at 405,313 to 405,543
_RS01840
HSERO_RS01845: HSERO_RS01845 - hypothetical protein, at 405,542 to 405,844
_RS01845
HSERO_RS01850: HSERO_RS01850 - signal recognition particle protein, at 406,226 to 407,596
_RS01850
HSERO_RS01855: HSERO_RS01855 - myristoyl transferase, at 407,919 to 408,878
_RS01855
Position (kb) 406
407
408 Strain fitness (log2 ratio) -1
0
1
2 at 405.228 kb on - strand at 405.316 kb on + strand at 405.324 kb on - strand at 405.713 kb on + strand, within HSERO_RS01845 at 405.735 kb on - strand, within HSERO_RS01845 at 406.089 kb on - strand at 406.153 kb on + strand at 407.685 kb on + strand at 407.718 kb on - strand at 407.728 kb on - strand at 407.728 kb on - strand at 407.753 kb on - strand at 407.901 kb on + strand at 407.909 kb on - strand at 407.938 kb on + strand at 408.038 kb on + strand at 408.154 kb on - strand, within HSERO_RS01855 at 408.462 kb on + strand, within HSERO_RS01855 at 408.504 kb on + strand, within HSERO_RS01855
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 405,228 - +1.8 405,316 + +1.2 405,324 - -1.7 405,713 + HSERO_RS01845 0.56 -0.1 405,735 - HSERO_RS01845 0.64 -1.6 406,089 - +0.2 406,153 + +0.9 407,685 + +0.2 407,718 - +0.2 407,728 - -0.3 407,728 - +0.2 407,753 - +0.8 407,901 + -0.1 407,909 - -0.2 407,938 + +0.5 408,038 + +1.2 408,154 - HSERO_RS01855 0.24 -1.7 408,462 + HSERO_RS01855 0.57 -0.1 408,504 + HSERO_RS01855 0.61 +0.6
Or see this region's nucleotide sequence