Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01725

Experiment: Sisomicin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01715 and HSERO_RS01720 are separated by 186 nucleotidesHSERO_RS01720 and HSERO_RS01725 are separated by 13 nucleotidesHSERO_RS01725 and HSERO_RS01730 are separated by 35 nucleotides HSERO_RS01715: HSERO_RS01715 - preprotein translocase subunit SecA, at 381,850 to 384,606 _RS01715 HSERO_RS01720: HSERO_RS01720 - membrane protein, at 384,793 to 385,587 _RS01720 HSERO_RS01725: HSERO_RS01725 - lysophospholipase, at 385,601 to 386,353 _RS01725 HSERO_RS01730: HSERO_RS01730 - N-acetylglutamate synthase, at 386,389 to 387,624 _RS01730 Position (kb) 385 386 387Strain fitness (log2 ratio) -2 -1 0 1at 384.729 kb on + strandat 384.819 kb on - strandat 384.907 kb on + strand, within HSERO_RS01720at 385.465 kb on - strand, within HSERO_RS01720at 385.643 kb on + strandat 385.678 kb on - strand, within HSERO_RS01725at 385.762 kb on + strand, within HSERO_RS01725at 385.957 kb on + strand, within HSERO_RS01725at 386.261 kb on + strand, within HSERO_RS01725at 386.265 kb on - strand, within HSERO_RS01725at 386.283 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml
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384,729 + -0.3
384,819 - -1.3
384,907 + HSERO_RS01720 0.14 +0.7
385,465 - HSERO_RS01720 0.85 +1.0
385,643 + -0.1
385,678 - HSERO_RS01725 0.10 +0.3
385,762 + HSERO_RS01725 0.21 +0.4
385,957 + HSERO_RS01725 0.47 +0.0
386,261 + HSERO_RS01725 0.88 -1.8
386,265 - HSERO_RS01725 0.88 -2.6
386,283 + -2.0

Or see this region's nucleotide sequence