Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01015 and HSERO_RS01020 are separated by 22 nucleotides HSERO_RS01020 and HSERO_RS01025 are separated by 29 nucleotides HSERO_RS01025 and HSERO_RS01030 are separated by 10 nucleotides HSERO_RS01030 and HSERO_RS01035 overlap by 4 nucleotides
HSERO_RS01015: HSERO_RS01015 - hypothetical protein, at 217,462 to 218,649
_RS01015
HSERO_RS01020: HSERO_RS01020 - hypothetical protein, at 218,672 to 219,103
_RS01020
HSERO_RS01025: HSERO_RS01025 - hypothetical protein, at 219,133 to 220,320
_RS01025
HSERO_RS01030: HSERO_RS01030 - tail-like protein, at 220,331 to 220,822
_RS01030
HSERO_RS01035: HSERO_RS01035 - phage-related tail protein, at 220,819 to 221,499
_RS01035
Position (kb) 219
220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 218.198 kb on + strand, within HSERO_RS01015 at 218.206 kb on - strand, within HSERO_RS01015 at 218.206 kb on - strand, within HSERO_RS01015 at 218.206 kb on - strand, within HSERO_RS01015 at 218.282 kb on + strand, within HSERO_RS01015 at 218.381 kb on + strand, within HSERO_RS01015 at 218.669 kb on + strand at 218.807 kb on + strand, within HSERO_RS01020 at 218.807 kb on + strand, within HSERO_RS01020 at 218.984 kb on + strand, within HSERO_RS01020 at 218.992 kb on - strand, within HSERO_RS01020 at 219.253 kb on + strand, within HSERO_RS01025 at 219.261 kb on - strand, within HSERO_RS01025 at 219.261 kb on - strand, within HSERO_RS01025 at 219.273 kb on + strand, within HSERO_RS01025 at 219.526 kb on + strand, within HSERO_RS01025 at 219.526 kb on + strand, within HSERO_RS01025 at 219.661 kb on + strand, within HSERO_RS01025 at 219.832 kb on - strand, within HSERO_RS01025 at 219.924 kb on + strand, within HSERO_RS01025 at 219.925 kb on + strand, within HSERO_RS01025 at 219.934 kb on + strand, within HSERO_RS01025 at 220.128 kb on + strand, within HSERO_RS01025 at 220.414 kb on + strand, within HSERO_RS01030 at 220.420 kb on + strand, within HSERO_RS01030 at 220.447 kb on - strand, within HSERO_RS01030 at 220.485 kb on - strand, within HSERO_RS01030 at 220.485 kb on - strand, within HSERO_RS01030 at 220.529 kb on + strand, within HSERO_RS01030 at 220.553 kb on - strand, within HSERO_RS01030 at 220.592 kb on + strand, within HSERO_RS01030 at 220.596 kb on - strand, within HSERO_RS01030 at 220.596 kb on - strand, within HSERO_RS01030 at 220.828 kb on + strand at 220.828 kb on + strand at 220.847 kb on - strand at 220.871 kb on - strand at 221.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 218,198 + HSERO_RS01015 0.62 +0.5 218,206 - HSERO_RS01015 0.63 -0.0 218,206 - HSERO_RS01015 0.63 -0.1 218,206 - HSERO_RS01015 0.63 +1.5 218,282 + HSERO_RS01015 0.69 -1.4 218,381 + HSERO_RS01015 0.77 +0.3 218,669 + -1.2 218,807 + HSERO_RS01020 0.31 +0.9 218,807 + HSERO_RS01020 0.31 -0.7 218,984 + HSERO_RS01020 0.72 +0.1 218,992 - HSERO_RS01020 0.74 +0.7 219,253 + HSERO_RS01025 0.10 -1.2 219,261 - HSERO_RS01025 0.11 -2.6 219,261 - HSERO_RS01025 0.11 -0.7 219,273 + HSERO_RS01025 0.12 -2.9 219,526 + HSERO_RS01025 0.33 -1.1 219,526 + HSERO_RS01025 0.33 -0.0 219,661 + HSERO_RS01025 0.44 -0.5 219,832 - HSERO_RS01025 0.59 -1.7 219,924 + HSERO_RS01025 0.67 +0.9 219,925 + HSERO_RS01025 0.67 -0.2 219,934 + HSERO_RS01025 0.67 -0.6 220,128 + HSERO_RS01025 0.84 -0.3 220,414 + HSERO_RS01030 0.17 -1.2 220,420 + HSERO_RS01030 0.18 -1.2 220,447 - HSERO_RS01030 0.24 +0.4 220,485 - HSERO_RS01030 0.31 +1.1 220,485 - HSERO_RS01030 0.31 -2.2 220,529 + HSERO_RS01030 0.40 -0.1 220,553 - HSERO_RS01030 0.45 -0.0 220,592 + HSERO_RS01030 0.53 +0.3 220,596 - HSERO_RS01030 0.54 +1.0 220,596 - HSERO_RS01030 0.54 -0.4 220,828 + +1.0 220,828 + +1.1 220,847 - -0.1 220,871 - -0.4 221,254 - +1.8
Or see this region's nucleotide sequence