Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00240 and HSERO_RS00245 are separated by 30 nucleotides HSERO_RS00245 and HSERO_RS00250 are separated by 530 nucleotides HSERO_RS00250 and HSERO_RS00255 overlap by 4 nucleotides
HSERO_RS00240: HSERO_RS00240 - LysR family transcription regulator protein, at 62,188 to 63,078
_RS00240
HSERO_RS00245: HSERO_RS00245 - hypothetical protein, at 63,109 to 63,564
_RS00245
HSERO_RS00250: HSERO_RS00250 - iron transporter, at 64,095 to 64,346
_RS00250
HSERO_RS00255: HSERO_RS00255 - iron transporter FeoB, at 64,343 to 66,169
_RS00255
Position (kb) 63
64 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 62.174 kb on + strand at 62.174 kb on + strand at 62.174 kb on + strand at 62.182 kb on - strand at 62.182 kb on - strand at 62.300 kb on - strand, within HSERO_RS00240 at 62.364 kb on + strand, within HSERO_RS00240 at 62.407 kb on - strand, within HSERO_RS00240 at 62.562 kb on + strand, within HSERO_RS00240 at 62.746 kb on + strand, within HSERO_RS00240 at 62.871 kb on + strand, within HSERO_RS00240 at 62.907 kb on - strand, within HSERO_RS00240 at 63.054 kb on - strand at 63.231 kb on - strand, within HSERO_RS00245 at 63.300 kb on + strand, within HSERO_RS00245 at 63.347 kb on - strand, within HSERO_RS00245 at 63.347 kb on - strand, within HSERO_RS00245 at 63.472 kb on + strand, within HSERO_RS00245 at 63.518 kb on + strand, within HSERO_RS00245 at 63.523 kb on + strand at 63.541 kb on + strand at 63.563 kb on - strand at 63.724 kb on + strand at 63.787 kb on + strand at 63.794 kb on + strand at 63.802 kb on - strand at 63.802 kb on - strand at 63.845 kb on - strand at 63.919 kb on - strand at 63.930 kb on - strand at 63.967 kb on + strand at 63.973 kb on + strand at 63.975 kb on - strand at 64.026 kb on + strand at 64.034 kb on - strand at 64.110 kb on - strand at 64.120 kb on - strand at 64.120 kb on - strand at 64.143 kb on - strand, within HSERO_RS00250 at 64.155 kb on - strand, within HSERO_RS00250 at 64.190 kb on + strand, within HSERO_RS00250 at 64.228 kb on - strand, within HSERO_RS00250 at 64.284 kb on + strand, within HSERO_RS00250 at 64.319 kb on + strand, within HSERO_RS00250 at 64.335 kb on + strand at 64.355 kb on + strand at 64.390 kb on + strand at 64.390 kb on + strand at 64.395 kb on + strand at 64.480 kb on - strand at 64.507 kb on - strand at 64.520 kb on - strand at 64.536 kb on - strand, within HSERO_RS00255 at 64.551 kb on + strand, within HSERO_RS00255
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 62,174 + +0.2 62,174 + -0.8 62,174 + +0.4 62,182 - -1.1 62,182 - -0.6 62,300 - HSERO_RS00240 0.13 -0.1 62,364 + HSERO_RS00240 0.20 -1.2 62,407 - HSERO_RS00240 0.25 -1.6 62,562 + HSERO_RS00240 0.42 -3.9 62,746 + HSERO_RS00240 0.63 -1.7 62,871 + HSERO_RS00240 0.77 -0.4 62,907 - HSERO_RS00240 0.81 -0.3 63,054 - -1.2 63,231 - HSERO_RS00245 0.27 +0.3 63,300 + HSERO_RS00245 0.42 -2.0 63,347 - HSERO_RS00245 0.52 +0.4 63,347 - HSERO_RS00245 0.52 +1.3 63,472 + HSERO_RS00245 0.80 -2.5 63,518 + HSERO_RS00245 0.90 -3.1 63,523 + -2.3 63,541 + +2.8 63,563 - +0.0 63,724 + +0.2 63,787 + -1.6 63,794 + -0.4 63,802 - -0.8 63,802 - -4.1 63,845 - -1.8 63,919 - +0.8 63,930 - -3.4 63,967 + -2.0 63,973 + +0.4 63,975 - -0.3 64,026 + -0.2 64,034 - -0.3 64,110 - -1.9 64,120 - +0.1 64,120 - +0.5 64,143 - HSERO_RS00250 0.19 +0.6 64,155 - HSERO_RS00250 0.24 -0.6 64,190 + HSERO_RS00250 0.38 -1.0 64,228 - HSERO_RS00250 0.53 -0.6 64,284 + HSERO_RS00250 0.75 +1.9 64,319 + HSERO_RS00250 0.89 -0.3 64,335 + +0.3 64,355 + +0.8 64,390 + +0.7 64,390 + -1.5 64,395 + -2.0 64,480 - +0.1 64,507 - -0.4 64,520 - -1.7 64,536 - HSERO_RS00255 0.11 +0.8 64,551 + HSERO_RS00255 0.11 -1.2
Or see this region's nucleotide sequence