Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00215 and HSERO_RS00220 are separated by 91 nucleotides HSERO_RS00220 and HSERO_RS00225 are separated by 472 nucleotides HSERO_RS00225 and HSERO_RS00230 are separated by 489 nucleotides
HSERO_RS00215: HSERO_RS00215 - hypothetical protein, at 57,620 to 57,916
_RS00215
HSERO_RS00220: HSERO_RS00220 - hypothetical protein, at 58,008 to 58,412
_RS00220
HSERO_RS00225: HSERO_RS00225 - glutamine amidotransferase, at 58,885 to 59,634
_RS00225
HSERO_RS00230: HSERO_RS00230 - hypothetical protein, at 60,124 to 60,444
_RS00230
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 58.028 kb on - strand at 58.028 kb on - strand at 58.039 kb on + strand at 58.039 kb on + strand at 58.040 kb on - strand at 58.044 kb on + strand at 58.089 kb on + strand at 58.197 kb on + strand, within HSERO_RS00220 at 58.415 kb on - strand at 58.429 kb on + strand at 58.461 kb on - strand at 58.473 kb on + strand at 58.542 kb on + strand at 58.590 kb on - strand at 58.640 kb on - strand at 58.856 kb on - strand at 58.887 kb on + strand at 58.898 kb on + strand at 58.906 kb on - strand at 58.906 kb on - strand at 58.906 kb on - strand at 58.964 kb on + strand, within HSERO_RS00225 at 58.972 kb on - strand, within HSERO_RS00225 at 59.000 kb on + strand, within HSERO_RS00225 at 59.010 kb on + strand, within HSERO_RS00225 at 59.070 kb on - strand, within HSERO_RS00225 at 59.072 kb on - strand, within HSERO_RS00225 at 59.147 kb on + strand, within HSERO_RS00225 at 59.155 kb on - strand, within HSERO_RS00225 at 59.155 kb on - strand, within HSERO_RS00225 at 59.187 kb on - strand, within HSERO_RS00225 at 59.193 kb on + strand, within HSERO_RS00225 at 59.297 kb on + strand, within HSERO_RS00225 at 59.377 kb on + strand, within HSERO_RS00225 at 59.385 kb on - strand, within HSERO_RS00225 at 59.391 kb on - strand, within HSERO_RS00225 at 59.935 kb on + strand at 60.241 kb on + strand, within HSERO_RS00230
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 58,028 - -2.9 58,028 - -1.6 58,039 + +0.7 58,039 + -2.0 58,040 - -3.5 58,044 + -0.8 58,089 + +1.8 58,197 + HSERO_RS00220 0.47 -0.4 58,415 - -0.6 58,429 + -0.2 58,461 - +0.4 58,473 + +0.6 58,542 + +1.3 58,590 - +0.0 58,640 - -0.8 58,856 - +1.2 58,887 + +0.1 58,898 + -0.8 58,906 - -0.8 58,906 - +0.7 58,906 - -2.2 58,964 + HSERO_RS00225 0.11 +0.5 58,972 - HSERO_RS00225 0.12 +0.1 59,000 + HSERO_RS00225 0.15 -0.6 59,010 + HSERO_RS00225 0.17 +0.2 59,070 - HSERO_RS00225 0.25 +1.8 59,072 - HSERO_RS00225 0.25 +0.7 59,147 + HSERO_RS00225 0.35 -0.3 59,155 - HSERO_RS00225 0.36 -1.3 59,155 - HSERO_RS00225 0.36 +0.9 59,187 - HSERO_RS00225 0.40 -0.6 59,193 + HSERO_RS00225 0.41 -0.8 59,297 + HSERO_RS00225 0.55 -0.3 59,377 + HSERO_RS00225 0.66 +0.2 59,385 - HSERO_RS00225 0.67 +0.8 59,391 - HSERO_RS00225 0.67 +0.6 59,935 + +0.4 60,241 + HSERO_RS00230 0.36 -0.6
Or see this region's nucleotide sequence