Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34580 and BPHYT_RS34585 overlap by 4 nucleotides BPHYT_RS34585 and BPHYT_RS34590 are separated by 224 nucleotides BPHYT_RS34590 and BPHYT_RS34595 are separated by 26 nucleotides
BPHYT_RS34580: BPHYT_RS34580 - DNA alkylation repair protein, at 3,366,227 to 3,366,928
_RS34580
BPHYT_RS34585: BPHYT_RS34585 - hypothetical protein, at 3,366,925 to 3,367,332
_RS34585
BPHYT_RS34590: BPHYT_RS34590 - multidrug transporter, at 3,367,557 to 3,368,966
_RS34590
BPHYT_RS34595: BPHYT_RS34595 - multidrug transporter, at 3,368,993 to 3,372,187
_RS34595
Position (kb) 3367
3368
3369 Strain fitness (log2 ratio) -1
0
1
2 at 3366.691 kb on - strand, within BPHYT_RS34580 at 3366.720 kb on - strand, within BPHYT_RS34580 at 3366.720 kb on - strand, within BPHYT_RS34580 at 3366.841 kb on + strand, within BPHYT_RS34580 at 3366.842 kb on - strand, within BPHYT_RS34580 at 3366.843 kb on + strand, within BPHYT_RS34580 at 3366.843 kb on + strand, within BPHYT_RS34580 at 3367.050 kb on - strand, within BPHYT_RS34585 at 3367.110 kb on + strand, within BPHYT_RS34585 at 3367.111 kb on - strand, within BPHYT_RS34585 at 3367.175 kb on + strand, within BPHYT_RS34585 at 3367.176 kb on - strand, within BPHYT_RS34585 at 3367.176 kb on - strand, within BPHYT_RS34585 at 3367.180 kb on - strand, within BPHYT_RS34585 at 3367.180 kb on - strand, within BPHYT_RS34585 at 3367.729 kb on + strand, within BPHYT_RS34590 at 3367.730 kb on - strand, within BPHYT_RS34590 at 3367.730 kb on - strand, within BPHYT_RS34590 at 3367.753 kb on + strand, within BPHYT_RS34590 at 3367.783 kb on + strand, within BPHYT_RS34590 at 3367.784 kb on - strand, within BPHYT_RS34590 at 3368.381 kb on + strand, within BPHYT_RS34590 at 3368.494 kb on + strand, within BPHYT_RS34590 at 3368.586 kb on - strand, within BPHYT_RS34590 at 3368.668 kb on + strand, within BPHYT_RS34590 at 3368.918 kb on - strand at 3369.354 kb on + strand, within BPHYT_RS34595 at 3369.354 kb on + strand, within BPHYT_RS34595 at 3369.456 kb on + strand, within BPHYT_RS34595 at 3369.507 kb on + strand, within BPHYT_RS34595 at 3369.507 kb on + strand, within BPHYT_RS34595 at 3369.507 kb on + strand, within BPHYT_RS34595 at 3369.508 kb on - strand, within BPHYT_RS34595 at 3369.541 kb on - strand, within BPHYT_RS34595 at 3369.800 kb on - strand, within BPHYT_RS34595 at 3369.800 kb on - strand, within BPHYT_RS34595 at 3369.800 kb on - strand, within BPHYT_RS34595 at 3369.803 kb on - strand, within BPHYT_RS34595 at 3369.834 kb on + strand, within BPHYT_RS34595 at 3369.835 kb on - strand, within BPHYT_RS34595 at 3369.835 kb on - strand, within BPHYT_RS34595 at 3369.888 kb on + strand, within BPHYT_RS34595 at 3369.888 kb on + strand, within BPHYT_RS34595 at 3369.931 kb on - strand, within BPHYT_RS34595
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 3,366,691 - BPHYT_RS34580 0.66 -0.4 3,366,720 - BPHYT_RS34580 0.70 +0.3 3,366,720 - BPHYT_RS34580 0.70 +0.2 3,366,841 + BPHYT_RS34580 0.87 -0.6 3,366,842 - BPHYT_RS34580 0.88 +0.0 3,366,843 + BPHYT_RS34580 0.88 -0.6 3,366,843 + BPHYT_RS34580 0.88 -1.3 3,367,050 - BPHYT_RS34585 0.31 +1.4 3,367,110 + BPHYT_RS34585 0.45 -0.2 3,367,111 - BPHYT_RS34585 0.46 -0.6 3,367,175 + BPHYT_RS34585 0.61 -0.9 3,367,176 - BPHYT_RS34585 0.62 +0.5 3,367,176 - BPHYT_RS34585 0.62 -0.9 3,367,180 - BPHYT_RS34585 0.62 -0.2 3,367,180 - BPHYT_RS34585 0.62 -0.0 3,367,729 + BPHYT_RS34590 0.12 +0.1 3,367,730 - BPHYT_RS34590 0.12 -0.4 3,367,730 - BPHYT_RS34590 0.12 -0.2 3,367,753 + BPHYT_RS34590 0.14 +0.3 3,367,783 + BPHYT_RS34590 0.16 +0.6 3,367,784 - BPHYT_RS34590 0.16 +0.6 3,368,381 + BPHYT_RS34590 0.58 -0.1 3,368,494 + BPHYT_RS34590 0.66 +0.4 3,368,586 - BPHYT_RS34590 0.73 -1.1 3,368,668 + BPHYT_RS34590 0.79 +2.1 3,368,918 - +0.9 3,369,354 + BPHYT_RS34595 0.11 +0.0 3,369,354 + BPHYT_RS34595 0.11 +0.3 3,369,456 + BPHYT_RS34595 0.14 +0.2 3,369,507 + BPHYT_RS34595 0.16 -0.1 3,369,507 + BPHYT_RS34595 0.16 -0.1 3,369,507 + BPHYT_RS34595 0.16 +0.1 3,369,508 - BPHYT_RS34595 0.16 +1.0 3,369,541 - BPHYT_RS34595 0.17 -0.1 3,369,800 - BPHYT_RS34595 0.25 +0.3 3,369,800 - BPHYT_RS34595 0.25 -0.9 3,369,800 - BPHYT_RS34595 0.25 -0.4 3,369,803 - BPHYT_RS34595 0.25 +0.5 3,369,834 + BPHYT_RS34595 0.26 -0.3 3,369,835 - BPHYT_RS34595 0.26 -0.2 3,369,835 - BPHYT_RS34595 0.26 +0.3 3,369,888 + BPHYT_RS34595 0.28 +1.7 3,369,888 + BPHYT_RS34595 0.28 +0.1 3,369,931 - BPHYT_RS34595 0.29 +0.5
Or see this region's nucleotide sequence