Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32810

Experiment: Xylitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS32805 and BPHYT_RS32810 are separated by 251 nucleotidesBPHYT_RS32810 and BPHYT_RS32815 overlap by 4 nucleotides BPHYT_RS32805: BPHYT_RS32805 - acylaldehyde oxidase, at 2,938,583 to 2,940,853 _RS32805 BPHYT_RS32810: BPHYT_RS32810 - xylose ABC transporter permease, at 2,941,105 to 2,942,304 _RS32810 BPHYT_RS32815: BPHYT_RS32815 - sugar ABC transporter, at 2,942,301 to 2,943,860 _RS32815 Position (kb) 2941 2942 2943Strain fitness (log2 ratio) -1 0 1at 2940.119 kb on + strand, within BPHYT_RS32805at 2940.136 kb on + strand, within BPHYT_RS32805at 2940.275 kb on - strand, within BPHYT_RS32805at 2940.782 kb on + strandat 2940.937 kb on + strandat 2941.185 kb on - strandat 2941.256 kb on + strand, within BPHYT_RS32810at 2941.257 kb on - strand, within BPHYT_RS32810at 2941.257 kb on - strand, within BPHYT_RS32810at 2941.485 kb on - strand, within BPHYT_RS32810at 2941.488 kb on + strand, within BPHYT_RS32810at 2942.289 kb on + strandat 2942.696 kb on + strand, within BPHYT_RS32815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
remove
2,940,119 + BPHYT_RS32805 0.68 -0.5
2,940,136 + BPHYT_RS32805 0.68 +0.0
2,940,275 - BPHYT_RS32805 0.75 +0.2
2,940,782 + -0.5
2,940,937 + +0.6
2,941,185 - -0.6
2,941,256 + BPHYT_RS32810 0.13 -0.7
2,941,257 - BPHYT_RS32810 0.13 -0.0
2,941,257 - BPHYT_RS32810 0.13 -0.6
2,941,485 - BPHYT_RS32810 0.32 -0.0
2,941,488 + BPHYT_RS32810 0.32 -0.6
2,942,289 + +0.6
2,942,696 + BPHYT_RS32815 0.25 -0.7

Or see this region's nucleotide sequence