Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31810

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31805 and BPHYT_RS31810 are separated by 358 nucleotidesBPHYT_RS31810 and BPHYT_RS31815 are separated by 768 nucleotides BPHYT_RS31805: BPHYT_RS31805 - beta-lactamase, at 2,693,845 to 2,695,158 _RS31805 BPHYT_RS31810: BPHYT_RS31810 - LysR family transcriptional regulator, at 2,695,517 to 2,696,431 _RS31810 BPHYT_RS31815: BPHYT_RS31815 - hypothetical protein, at 2,697,200 to 2,697,400 _RS31815 Position (kb) 2695 2696 2697Strain fitness (log2 ratio) -3 -2 -1 0 1at 2694.917 kb on + strand, within BPHYT_RS31805at 2695.009 kb on - strand, within BPHYT_RS31805at 2695.039 kb on - strandat 2695.317 kb on + strandat 2695.337 kb on + strandat 2695.378 kb on + strandat 2695.406 kb on + strandat 2696.095 kb on - strand, within BPHYT_RS31810at 2696.346 kb on - strandat 2696.346 kb on - strandat 2696.346 kb on - strandat 2696.648 kb on - strandat 2697.111 kb on + strandat 2697.174 kb on - strandat 2697.280 kb on + strand, within BPHYT_RS31815at 2697.281 kb on - strand, within BPHYT_RS31815at 2697.345 kb on - strand, within BPHYT_RS31815at 2697.345 kb on - strand, within BPHYT_RS31815at 2697.349 kb on - strand, within BPHYT_RS31815at 2697.368 kb on + strand, within BPHYT_RS31815

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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2,694,917 + BPHYT_RS31805 0.82 -0.6
2,695,009 - BPHYT_RS31805 0.89 -1.0
2,695,039 - -0.1
2,695,317 + -0.3
2,695,337 + -0.0
2,695,378 + +0.3
2,695,406 + -0.1
2,696,095 - BPHYT_RS31810 0.63 -1.4
2,696,346 - -1.6
2,696,346 - +0.6
2,696,346 - +0.9
2,696,648 - -0.5
2,697,111 + -1.1
2,697,174 - -3.0
2,697,280 + BPHYT_RS31815 0.40 -2.5
2,697,281 - BPHYT_RS31815 0.40 -1.8
2,697,345 - BPHYT_RS31815 0.72 -1.8
2,697,345 - BPHYT_RS31815 0.72 -1.6
2,697,349 - BPHYT_RS31815 0.74 -2.3
2,697,368 + BPHYT_RS31815 0.84 -1.8

Or see this region's nucleotide sequence