Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27435 and BPHYT_RS27440 are separated by 211 nucleotides BPHYT_RS27440 and BPHYT_RS27445 are separated by 410 nucleotides BPHYT_RS27445 and BPHYT_RS27450 are separated by 120 nucleotides
BPHYT_RS27435: BPHYT_RS27435 - amylo-alpha-1,6-glucosidase, at 1,729,677 to 1,731,950
_RS27435
BPHYT_RS27440: BPHYT_RS27440 - type II citrate synthase, at 1,732,162 to 1,733,460
_RS27440
BPHYT_RS27445: BPHYT_RS27445 - hypothetical protein, at 1,733,871 to 1,734,272
_RS27445
BPHYT_RS27450: BPHYT_RS27450 - alpha/beta hydrolase, at 1,734,393 to 1,735,196
_RS27450
Position (kb)
1732
1733
1734 Strain fitness (log2 ratio)
-1
0
1 at 1731.529 kb on + strand, within BPHYT_RS27435 at 1731.785 kb on + strand at 1731.963 kb on + strand at 1732.022 kb on + strand at 1732.050 kb on + strand at 1732.518 kb on - strand, within BPHYT_RS27440 at 1732.518 kb on - strand, within BPHYT_RS27440 at 1732.518 kb on - strand, within BPHYT_RS27440 at 1732.916 kb on + strand, within BPHYT_RS27440 at 1732.922 kb on + strand, within BPHYT_RS27440 at 1732.923 kb on - strand, within BPHYT_RS27440 at 1733.189 kb on + strand, within BPHYT_RS27440 at 1733.275 kb on - strand, within BPHYT_RS27440 at 1733.276 kb on + strand, within BPHYT_RS27440 at 1733.462 kb on + strand at 1734.006 kb on - strand, within BPHYT_RS27445 at 1734.121 kb on - strand, within BPHYT_RS27445 at 1734.271 kb on - strand at 1734.271 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 1,731,529 + BPHYT_RS27435 0.81 -0.3 1,731,785 + +1.3 1,731,963 + +0.5 1,732,022 + -0.2 1,732,050 + +0.8 1,732,518 - BPHYT_RS27440 0.27 +0.9 1,732,518 - BPHYT_RS27440 0.27 -0.5 1,732,518 - BPHYT_RS27440 0.27 +1.2 1,732,916 + BPHYT_RS27440 0.58 -0.2 1,732,922 + BPHYT_RS27440 0.59 +0.4 1,732,923 - BPHYT_RS27440 0.59 -0.5 1,733,189 + BPHYT_RS27440 0.79 +0.8 1,733,275 - BPHYT_RS27440 0.86 -0.5 1,733,276 + BPHYT_RS27440 0.86 +0.4 1,733,462 + +0.5 1,734,006 - BPHYT_RS27445 0.34 +0.7 1,734,121 - BPHYT_RS27445 0.62 +0.3 1,734,271 - -0.2 1,734,271 - +0.8
Or see this region's nucleotide sequence