Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23570

Experiment: Xylitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS23565 and BPHYT_RS23570 are separated by 351 nucleotidesBPHYT_RS23570 and BPHYT_RS23575 are separated by 28 nucleotides BPHYT_RS23565: BPHYT_RS23565 - ABC transporter, at 857,605 to 859,398 _RS23565 BPHYT_RS23570: BPHYT_RS23570 - chemotaxis protein CheY, at 859,750 to 860,916 _RS23570 BPHYT_RS23575: BPHYT_RS23575 - hypothetical protein, at 860,945 to 862,186 _RS23575 Position (kb) 859 860 861Strain fitness (log2 ratio) -2 -1 0 1at 858.820 kb on - strandat 859.061 kb on + strand, within BPHYT_RS23565at 859.638 kb on - strandat 859.639 kb on + strandat 859.890 kb on - strand, within BPHYT_RS23570at 860.273 kb on - strand, within BPHYT_RS23570at 860.336 kb on - strand, within BPHYT_RS23570at 860.336 kb on - strand, within BPHYT_RS23570at 860.722 kb on + strand, within BPHYT_RS23570at 860.723 kb on - strand, within BPHYT_RS23570at 860.723 kb on - strand, within BPHYT_RS23570at 860.827 kb on - strandat 860.896 kb on - strandat 860.983 kb on - strandat 861.081 kb on + strand, within BPHYT_RS23575at 861.087 kb on + strand, within BPHYT_RS23575at 861.088 kb on - strand, within BPHYT_RS23575at 861.249 kb on + strand, within BPHYT_RS23575at 861.273 kb on + strand, within BPHYT_RS23575at 861.273 kb on + strand, within BPHYT_RS23575at 861.274 kb on - strand, within BPHYT_RS23575at 861.274 kb on - strand, within BPHYT_RS23575at 861.277 kb on + strand, within BPHYT_RS23575at 861.306 kb on + strand, within BPHYT_RS23575at 861.306 kb on + strand, within BPHYT_RS23575at 861.306 kb on + strand, within BPHYT_RS23575at 861.421 kb on + strand, within BPHYT_RS23575at 861.454 kb on + strand, within BPHYT_RS23575at 861.604 kb on + strand, within BPHYT_RS23575at 861.606 kb on + strand, within BPHYT_RS23575at 861.607 kb on - strand, within BPHYT_RS23575at 861.607 kb on - strand, within BPHYT_RS23575at 861.607 kb on - strand, within BPHYT_RS23575at 861.607 kb on - strand, within BPHYT_RS23575at 861.684 kb on + strand, within BPHYT_RS23575at 861.751 kb on - strand, within BPHYT_RS23575at 861.796 kb on - strand, within BPHYT_RS23575at 861.796 kb on - strand, within BPHYT_RS23575at 861.796 kb on - strand, within BPHYT_RS23575at 861.852 kb on + strand, within BPHYT_RS23575at 861.853 kb on - strand, within BPHYT_RS23575at 861.853 kb on - strand, within BPHYT_RS23575at 861.853 kb on - strand, within BPHYT_RS23575

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
remove
858,820 - +1.5
859,061 + BPHYT_RS23565 0.81 +0.5
859,638 - -0.6
859,639 + +0.9
859,890 - BPHYT_RS23570 0.12 -1.1
860,273 - BPHYT_RS23570 0.45 -0.2
860,336 - BPHYT_RS23570 0.50 -2.7
860,336 - BPHYT_RS23570 0.50 -1.2
860,722 + BPHYT_RS23570 0.83 -1.5
860,723 - BPHYT_RS23570 0.83 -2.3
860,723 - BPHYT_RS23570 0.83 -1.7
860,827 - -1.5
860,896 - +0.4
860,983 - -0.1
861,081 + BPHYT_RS23575 0.11 -0.3
861,087 + BPHYT_RS23575 0.11 +0.3
861,088 - BPHYT_RS23575 0.12 +0.5
861,249 + BPHYT_RS23575 0.24 -0.5
861,273 + BPHYT_RS23575 0.26 -0.4
861,273 + BPHYT_RS23575 0.26 +0.2
861,274 - BPHYT_RS23575 0.26 -1.8
861,274 - BPHYT_RS23575 0.26 -0.7
861,277 + BPHYT_RS23575 0.27 -0.3
861,306 + BPHYT_RS23575 0.29 -1.0
861,306 + BPHYT_RS23575 0.29 -0.3
861,306 + BPHYT_RS23575 0.29 -0.0
861,421 + BPHYT_RS23575 0.38 +0.7
861,454 + BPHYT_RS23575 0.41 +0.9
861,604 + BPHYT_RS23575 0.53 +0.3
861,606 + BPHYT_RS23575 0.53 -0.1
861,607 - BPHYT_RS23575 0.53 -1.2
861,607 - BPHYT_RS23575 0.53 +0.2
861,607 - BPHYT_RS23575 0.53 +0.3
861,607 - BPHYT_RS23575 0.53 -0.2
861,684 + BPHYT_RS23575 0.60 -0.1
861,751 - BPHYT_RS23575 0.65 -0.4
861,796 - BPHYT_RS23575 0.69 -0.1
861,796 - BPHYT_RS23575 0.69 -1.9
861,796 - BPHYT_RS23575 0.69 -1.2
861,852 + BPHYT_RS23575 0.73 -0.1
861,853 - BPHYT_RS23575 0.73 -0.3
861,853 - BPHYT_RS23575 0.73 -0.6
861,853 - BPHYT_RS23575 0.73 -1.3

Or see this region's nucleotide sequence