Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23215 and BPHYT_RS23220 are separated by 234 nucleotides BPHYT_RS23220 and BPHYT_RS23225 are separated by 113 nucleotides BPHYT_RS23225 and BPHYT_RS23230 are separated by 30 nucleotides
BPHYT_RS23215: BPHYT_RS23215 - transcriptional regulator, at 773,475 to 774,413
_RS23215
BPHYT_RS23220: BPHYT_RS23220 - hypothetical protein, at 774,648 to 775,379
_RS23220
BPHYT_RS23225: BPHYT_RS23225 - hypothetical protein, at 775,493 to 775,699
_RS23225
BPHYT_RS23230: BPHYT_RS23230 - histidine kinase, at 775,730 to 777,703
_RS23230
Position (kb) 774
775
776 Strain fitness (log2 ratio) -2
-1
0
1 at 774.199 kb on + strand, within BPHYT_RS23215 at 774.199 kb on + strand, within BPHYT_RS23215 at 774.199 kb on + strand, within BPHYT_RS23215 at 774.209 kb on - strand, within BPHYT_RS23215 at 774.659 kb on - strand at 774.659 kb on - strand at 774.741 kb on + strand, within BPHYT_RS23220 at 775.111 kb on - strand, within BPHYT_RS23220 at 775.313 kb on + strand at 775.608 kb on - strand, within BPHYT_RS23225 at 775.610 kb on + strand, within BPHYT_RS23225 at 775.752 kb on + strand at 776.257 kb on - strand, within BPHYT_RS23230
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 774,199 + BPHYT_RS23215 0.77 -0.4 774,199 + BPHYT_RS23215 0.77 +0.4 774,199 + BPHYT_RS23215 0.77 +0.4 774,209 - BPHYT_RS23215 0.78 +0.2 774,659 - +0.1 774,659 - -1.0 774,741 + BPHYT_RS23220 0.13 -0.6 775,111 - BPHYT_RS23220 0.63 -0.7 775,313 + -0.2 775,608 - BPHYT_RS23225 0.56 +0.0 775,610 + BPHYT_RS23225 0.57 -2.1 775,752 + +0.9 776,257 - BPHYT_RS23230 0.27 -0.9
Or see this region's nucleotide sequence