Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21570 and BPHYT_RS21575 are separated by 567 nucleotides BPHYT_RS21575 and BPHYT_RS21580 overlap by 11 nucleotides BPHYT_RS21580 and BPHYT_RS21585 are separated by 8 nucleotides BPHYT_RS21585 and BPHYT_RS21590 are separated by 40 nucleotides
BPHYT_RS21570: BPHYT_RS21570 - oxidoreductase, at 398,332 to 399,021
_RS21570
BPHYT_RS21575: BPHYT_RS21575 - hypothetical protein, at 399,589 to 399,789
_RS21575
BPHYT_RS21580: BPHYT_RS21580 - hypothetical protein, at 399,779 to 399,967
_RS21580
BPHYT_RS21585: BPHYT_RS21585 - short-chain dehydrogenase, at 399,976 to 400,737
_RS21585
BPHYT_RS21590: BPHYT_RS21590 - NmrA family transcriptional regulator, at 400,778 to 401,656
_RS21590
Position (kb) 399
400
401 Strain fitness (log2 ratio) -1
0
1
2 at 399.118 kb on + strand at 399.119 kb on - strand at 399.258 kb on - strand at 399.468 kb on + strand at 399.627 kb on + strand, within BPHYT_RS21575 at 399.827 kb on + strand, within BPHYT_RS21580 at 400.167 kb on + strand, within BPHYT_RS21585 at 400.314 kb on - strand, within BPHYT_RS21585 at 400.329 kb on + strand, within BPHYT_RS21585 at 400.421 kb on - strand, within BPHYT_RS21585 at 400.710 kb on + strand at 401.077 kb on + strand, within BPHYT_RS21590
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 399,118 + +0.2 399,119 - -1.5 399,258 - -0.1 399,468 + +0.4 399,627 + BPHYT_RS21575 0.19 +0.4 399,827 + BPHYT_RS21580 0.25 +1.3 400,167 + BPHYT_RS21585 0.25 +0.3 400,314 - BPHYT_RS21585 0.44 +0.4 400,329 + BPHYT_RS21585 0.46 +0.3 400,421 - BPHYT_RS21585 0.58 +2.3 400,710 + -0.4 401,077 + BPHYT_RS21590 0.34 -0.1
Or see this region's nucleotide sequence