Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20295 and BPHYT_RS20300 are separated by 415 nucleotides BPHYT_RS20300 and BPHYT_RS20305 are separated by 107 nucleotides BPHYT_RS20305 and BPHYT_RS20310 are separated by 392 nucleotides
BPHYT_RS20295: BPHYT_RS20295 - ligand-gated channel, at 112,566 to 114,749
_RS20295
BPHYT_RS20300: BPHYT_RS20300 - isocitrate dehydrogenase, at 115,165 to 117,393
_RS20300
BPHYT_RS20305: BPHYT_RS20305 - hypothetical protein, at 117,501 to 117,731
_RS20305
BPHYT_RS20310: BPHYT_RS20310 - alpha/beta hydrolase, at 118,124 to 118,942
_RS20310
Position (kb) 115
116
117
118 Strain fitness (log2 ratio) -2
-1
0
1 at 114.187 kb on + strand, within BPHYT_RS20295 at 114.187 kb on + strand, within BPHYT_RS20295 at 114.188 kb on - strand, within BPHYT_RS20295 at 114.188 kb on - strand, within BPHYT_RS20295 at 114.220 kb on + strand, within BPHYT_RS20295 at 114.419 kb on - strand, within BPHYT_RS20295 at 114.419 kb on - strand, within BPHYT_RS20295 at 114.844 kb on - strand at 114.868 kb on + strand at 114.923 kb on - strand at 114.937 kb on - strand at 114.937 kb on - strand at 115.026 kb on - strand at 115.041 kb on + strand at 115.043 kb on + strand at 115.137 kb on + strand at 117.484 kb on - strand at 117.600 kb on + strand, within BPHYT_RS20305 at 117.600 kb on + strand, within BPHYT_RS20305 at 117.600 kb on + strand, within BPHYT_RS20305 at 117.601 kb on - strand, within BPHYT_RS20305 at 117.601 kb on - strand, within BPHYT_RS20305 at 117.655 kb on + strand, within BPHYT_RS20305 at 117.656 kb on - strand, within BPHYT_RS20305 at 117.656 kb on - strand, within BPHYT_RS20305 at 117.692 kb on - strand, within BPHYT_RS20305 at 117.735 kb on + strand at 117.755 kb on - strand at 117.867 kb on + strand at 117.868 kb on - strand at 117.935 kb on + strand at 118.251 kb on + strand, within BPHYT_RS20310 at 118.252 kb on - strand, within BPHYT_RS20310 at 118.341 kb on + strand, within BPHYT_RS20310 at 118.341 kb on + strand, within BPHYT_RS20310 at 118.341 kb on + strand, within BPHYT_RS20310
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 114,187 + BPHYT_RS20295 0.74 +1.1 114,187 + BPHYT_RS20295 0.74 +0.2 114,188 - BPHYT_RS20295 0.74 +1.4 114,188 - BPHYT_RS20295 0.74 +0.0 114,220 + BPHYT_RS20295 0.76 +0.4 114,419 - BPHYT_RS20295 0.85 -2.4 114,419 - BPHYT_RS20295 0.85 +0.3 114,844 - +0.0 114,868 + +0.4 114,923 - -0.9 114,937 - +0.4 114,937 - +0.3 115,026 - +0.3 115,041 + +0.0 115,043 + -1.7 115,137 + +0.6 117,484 - -1.1 117,600 + BPHYT_RS20305 0.43 -0.2 117,600 + BPHYT_RS20305 0.43 -0.3 117,600 + BPHYT_RS20305 0.43 +0.2 117,601 - BPHYT_RS20305 0.43 -0.6 117,601 - BPHYT_RS20305 0.43 -0.6 117,655 + BPHYT_RS20305 0.67 -0.4 117,656 - BPHYT_RS20305 0.67 -0.4 117,656 - BPHYT_RS20305 0.67 -1.3 117,692 - BPHYT_RS20305 0.83 -0.1 117,735 + -1.8 117,755 - +0.8 117,867 + -0.4 117,868 - -0.1 117,935 + +0.0 118,251 + BPHYT_RS20310 0.16 +0.7 118,252 - BPHYT_RS20310 0.16 +0.3 118,341 + BPHYT_RS20310 0.26 -0.3 118,341 + BPHYT_RS20310 0.26 +0.4 118,341 + BPHYT_RS20310 0.26 -0.4
Or see this region's nucleotide sequence