Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS14885 and BPHYT_RS14890 are separated by 165 nucleotides BPHYT_RS14890 and BPHYT_RS14895 are separated by 35 nucleotides BPHYT_RS14895 and BPHYT_RS14900 are separated by 19 nucleotides
BPHYT_RS14885: BPHYT_RS14885 - 30S ribosomal protein S1, at 3,384,766 to 3,386,499
_RS14885
BPHYT_RS14890: BPHYT_RS14890 - cytidylate kinase, at 3,386,665 to 3,387,351
_RS14890
BPHYT_RS14895: BPHYT_RS14895 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,387,387 to 3,388,691
_RS14895
BPHYT_RS14900: BPHYT_RS14900 - prephenate dehydrogenase, at 3,388,711 to 3,389,652
_RS14900
Position (kb) 3387
3388
3389 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 3386.681 kb on - strand at 3387.450 kb on - strand at 3387.524 kb on - strand, within BPHYT_RS14895 at 3387.578 kb on - strand, within BPHYT_RS14895 at 3387.578 kb on - strand, within BPHYT_RS14895 at 3387.672 kb on - strand, within BPHYT_RS14895 at 3388.364 kb on - strand, within BPHYT_RS14895 at 3389.193 kb on - strand, within BPHYT_RS14900 at 3389.626 kb on - strand at 3389.657 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 3,386,681 - +0.0 3,387,450 - -4.9 3,387,524 - BPHYT_RS14895 0.10 -5.1 3,387,578 - BPHYT_RS14895 0.15 -2.3 3,387,578 - BPHYT_RS14895 0.15 -2.7 3,387,672 - BPHYT_RS14895 0.22 -3.0 3,388,364 - BPHYT_RS14895 0.75 -2.4 3,389,193 - BPHYT_RS14900 0.51 -3.1 3,389,626 - +0.4 3,389,657 - -0.6
Or see this region's nucleotide sequence