Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06685

Experiment: Xylitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS06680 and BPHYT_RS06685 are separated by 14 nucleotidesBPHYT_RS06685 and BPHYT_RS06690 are separated by 23 nucleotides BPHYT_RS06680: BPHYT_RS06680 - NADH:ubiquinone oxidoreductase subunit L, at 1,513,186 to 1,515,273 _RS06680 BPHYT_RS06685: BPHYT_RS06685 - NADH:ubiquinone oxidoreductase subunit M, at 1,515,288 to 1,516,778 _RS06685 BPHYT_RS06690: BPHYT_RS06690 - NADH:ubiquinone oxidoreductase subunit N, at 1,516,802 to 1,518,274 _RS06690 Position (kb) 1515 1516 1517Strain fitness (log2 ratio) -3 -2 -1 0 1at 1515.286 kb on + strandat 1516.149 kb on + strand, within BPHYT_RS06685at 1516.149 kb on + strand, within BPHYT_RS06685at 1516.720 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
remove
1,515,286 + -2.2
1,516,149 + BPHYT_RS06685 0.58 -3.6
1,516,149 + BPHYT_RS06685 0.58 -2.1
1,516,720 + -1.1

Or see this region's nucleotide sequence