Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03980 and BPHYT_RS03985 are separated by 53 nucleotides BPHYT_RS03985 and BPHYT_RS03990 are separated by 65 nucleotides
BPHYT_RS03980: BPHYT_RS03980 - mannose-1-phosphate guanyltransferase, at 904,729 to 906,276
_RS03980
BPHYT_RS03985: BPHYT_RS03985 - undecaprenyl-phosphate glucose phosphotransferase, at 906,330 to 907,715
_RS03985
BPHYT_RS03990: BPHYT_RS03990 - sugar ABC transporter substrate-binding protein, at 907,781 to 908,920
_RS03990
Position (kb) 906
907
908 Strain fitness (log2 ratio) -1
0
1
2
3 at 905.386 kb on + strand, within BPHYT_RS03980 at 905.386 kb on + strand, within BPHYT_RS03980 at 905.387 kb on - strand, within BPHYT_RS03980 at 905.387 kb on - strand, within BPHYT_RS03980 at 905.512 kb on + strand, within BPHYT_RS03980 at 905.512 kb on + strand, within BPHYT_RS03980 at 905.567 kb on - strand, within BPHYT_RS03980 at 906.259 kb on + strand at 906.259 kb on + strand at 906.504 kb on + strand, within BPHYT_RS03985 at 906.551 kb on - strand, within BPHYT_RS03985 at 906.780 kb on - strand, within BPHYT_RS03985 at 906.909 kb on + strand, within BPHYT_RS03985 at 906.909 kb on + strand, within BPHYT_RS03985 at 906.910 kb on - strand, within BPHYT_RS03985 at 906.911 kb on + strand, within BPHYT_RS03985 at 906.912 kb on - strand, within BPHYT_RS03985 at 906.912 kb on - strand, within BPHYT_RS03985 at 907.291 kb on - strand, within BPHYT_RS03985 at 907.292 kb on + strand, within BPHYT_RS03985 at 907.293 kb on - strand at 907.347 kb on - strand, within BPHYT_RS03985 at 907.515 kb on - strand, within BPHYT_RS03985 at 907.532 kb on - strand, within BPHYT_RS03985 at 908.211 kb on + strand, within BPHYT_RS03990 at 908.212 kb on - strand, within BPHYT_RS03990 at 908.255 kb on + strand, within BPHYT_RS03990 at 908.333 kb on - strand, within BPHYT_RS03990 at 908.582 kb on + strand, within BPHYT_RS03990 at 908.582 kb on + strand, within BPHYT_RS03990
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 905,386 + BPHYT_RS03980 0.42 +1.5 905,386 + BPHYT_RS03980 0.42 +1.1 905,387 - BPHYT_RS03980 0.43 +1.6 905,387 - BPHYT_RS03980 0.43 +2.3 905,512 + BPHYT_RS03980 0.51 +1.5 905,512 + BPHYT_RS03980 0.51 +1.5 905,567 - BPHYT_RS03980 0.54 +1.4 906,259 + +0.5 906,259 + +2.8 906,504 + BPHYT_RS03985 0.13 +1.1 906,551 - BPHYT_RS03985 0.16 +0.6 906,780 - BPHYT_RS03985 0.32 +0.6 906,909 + BPHYT_RS03985 0.42 +1.1 906,909 + BPHYT_RS03985 0.42 +1.3 906,910 - BPHYT_RS03985 0.42 +0.8 906,911 + BPHYT_RS03985 0.42 +0.3 906,912 - BPHYT_RS03985 0.42 +1.3 906,912 - BPHYT_RS03985 0.42 -0.0 907,291 - BPHYT_RS03985 0.69 +1.0 907,292 + BPHYT_RS03985 0.69 +0.6 907,293 - +2.6 907,347 - BPHYT_RS03985 0.73 -1.0 907,515 - BPHYT_RS03985 0.85 +2.0 907,532 - BPHYT_RS03985 0.87 +1.1 908,211 + BPHYT_RS03990 0.38 +1.3 908,212 - BPHYT_RS03990 0.38 +1.4 908,255 + BPHYT_RS03990 0.42 +0.1 908,333 - BPHYT_RS03990 0.48 +0.7 908,582 + BPHYT_RS03990 0.70 +0.7 908,582 + BPHYT_RS03990 0.70 +1.6
Or see this region's nucleotide sequence