Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02130 and BPHYT_RS02135 are separated by 60 nucleotides BPHYT_RS02135 and BPHYT_RS02140 are separated by 347 nucleotides
BPHYT_RS02130: BPHYT_RS02130 - hydroxymethylglutaryl-CoA lyase, at 488,141 to 489,067
_RS02130
BPHYT_RS02135: BPHYT_RS02135 - glyoxylate reductase, at 489,128 to 490,069
_RS02135
BPHYT_RS02140: BPHYT_RS02140 - alpha/beta hydrolase, at 490,417 to 491,019
_RS02140
Position (kb) 489
490
491 Strain fitness (log2 ratio) -2
-1
0
1 at 488.299 kb on - strand, within BPHYT_RS02130 at 488.299 kb on - strand, within BPHYT_RS02130 at 489.079 kb on + strand at 489.080 kb on - strand at 489.124 kb on - strand at 489.405 kb on + strand, within BPHYT_RS02135 at 489.405 kb on + strand, within BPHYT_RS02135 at 489.763 kb on - strand, within BPHYT_RS02135 at 489.818 kb on - strand, within BPHYT_RS02135 at 490.183 kb on + strand at 490.184 kb on - strand at 490.184 kb on - strand at 490.189 kb on + strand at 490.574 kb on + strand, within BPHYT_RS02140 at 490.575 kb on - strand, within BPHYT_RS02140 at 490.638 kb on + strand, within BPHYT_RS02140 at 490.638 kb on + strand, within BPHYT_RS02140 at 490.639 kb on - strand, within BPHYT_RS02140 at 490.639 kb on - strand, within BPHYT_RS02140 at 490.663 kb on + strand, within BPHYT_RS02140 at 490.664 kb on - strand, within BPHYT_RS02140 at 490.685 kb on - strand, within BPHYT_RS02140 at 490.890 kb on + strand, within BPHYT_RS02140 at 490.891 kb on - strand, within BPHYT_RS02140 at 491.000 kb on + strand at 491.000 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 488,299 - BPHYT_RS02130 0.17 +0.1 488,299 - BPHYT_RS02130 0.17 -0.5 489,079 + +0.8 489,080 - +0.2 489,124 - -0.3 489,405 + BPHYT_RS02135 0.29 -1.7 489,405 + BPHYT_RS02135 0.29 -0.8 489,763 - BPHYT_RS02135 0.67 -1.7 489,818 - BPHYT_RS02135 0.73 -1.9 490,183 + +0.6 490,184 - +0.5 490,184 - +0.2 490,189 + -0.5 490,574 + BPHYT_RS02140 0.26 +0.4 490,575 - BPHYT_RS02140 0.26 -0.2 490,638 + BPHYT_RS02140 0.37 +0.8 490,638 + BPHYT_RS02140 0.37 +0.9 490,639 - BPHYT_RS02140 0.37 +0.2 490,639 - BPHYT_RS02140 0.37 +1.1 490,663 + BPHYT_RS02140 0.41 -0.7 490,664 - BPHYT_RS02140 0.41 -0.3 490,685 - BPHYT_RS02140 0.44 -1.3 490,890 + BPHYT_RS02140 0.78 -1.0 490,891 - BPHYT_RS02140 0.79 -0.7 491,000 + +1.5 491,000 + -0.4
Or see this region's nucleotide sequence