Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19740

Experiment: CDM1 without Isoleucine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Isoleucine
2,215,998	+				-1.3
2,216,004	-				-0.7
2,216,010	-				-2.7
2,216,016	+				-1.2
2,216,023	+				-2.7
2,216,023	+				-3.3
2,216,047	-				-1.6
2,216,047	-				+0.2
2,216,080	-				-1.6
2,216,080	-				-0.8
2,216,080	-				-1.9
2,216,113	-				-4.9
2,216,115	+				-5.4
2,216,119	-				-1.1
2,216,123	-				-1.6
2,216,140	-				-4.3
2,216,140	-				-2.9
2,216,140	-				-3.0
2,216,181	+		BBR_RS19740	0.11	-3.5
2,216,191	+		BBR_RS19740	0.12	-4.9
2,216,211	+		BBR_RS19740	0.13	-3.4
2,216,211	+		BBR_RS19740	0.13	-5.1
2,216,214	-		BBR_RS19740	0.13	-2.7
2,216,259	+		BBR_RS19740	0.17	-1.1
2,216,259	+		BBR_RS19740	0.17	-2.3
2,216,267	-		BBR_RS19740	0.17	-5.2
2,216,271	+		BBR_RS19740	0.18	-4.6
2,216,275	+		BBR_RS19740	0.18	-3.5
2,216,275	-		BBR_RS19740	0.18	-3.7
2,216,279	-		BBR_RS19740	0.18	-1.9
2,216,285	+		BBR_RS19740	0.19	-4.2
2,216,285	+		BBR_RS19740	0.19	-3.9
2,216,291	-		BBR_RS19740	0.19	-5.4
2,216,291	-		BBR_RS19740	0.19	-3.0
2,216,291	-		BBR_RS19740	0.19	-1.5
2,216,294	+		BBR_RS19740	0.19	-3.0
2,216,294	-		BBR_RS19740	0.19	-3.2
2,216,299	-		BBR_RS19740	0.20	-4.6
2,216,301	-		BBR_RS19740	0.20	-1.5
2,216,303	+		BBR_RS19740	0.20	-2.0
2,216,303	+		BBR_RS19740	0.20	-4.8
2,216,303	+		BBR_RS19740	0.20	-4.2
2,216,303	+		BBR_RS19740	0.20	-4.7
2,216,308	-		BBR_RS19740	0.20	-2.1
2,216,311	-		BBR_RS19740	0.21	-3.7
2,216,321	+		BBR_RS19740	0.21	-3.3
2,216,321	+		BBR_RS19740	0.21	-5.7
2,216,321	+		BBR_RS19740	0.21	-4.2
2,216,329	-		BBR_RS19740	0.22	-3.1
2,216,329	-		BBR_RS19740	0.22	-3.9
2,216,329	-		BBR_RS19740	0.22	-2.8
2,216,329	-		BBR_RS19740	0.22	-1.9
2,216,329	-		BBR_RS19740	0.22	-3.3
2,216,329	-		BBR_RS19740	0.22	-4.4
2,216,339	-		BBR_RS19740	0.23	-2.8
2,216,345	-		BBR_RS19740	0.23	-2.8
2,216,350	-		BBR_RS19740	0.24	-3.4
2,216,350	-		BBR_RS19740	0.24	-1.5
2,216,356	+		BBR_RS19740	0.24	-3.0
2,216,360	-		BBR_RS19740	0.24	-3.0
2,216,360	-		BBR_RS19740	0.24	-4.0
2,216,409	+		BBR_RS19740	0.28	-1.2
2,216,422	-		BBR_RS19740	0.29	-2.6
2,216,422	-		BBR_RS19740	0.29	-4.2
2,216,433	-		BBR_RS19740	0.30	-3.1
2,216,435	+		BBR_RS19740	0.30	-3.8
2,216,435	+		BBR_RS19740	0.30	-3.0
2,216,435	+		BBR_RS19740	0.30	-3.2
2,216,435	+		BBR_RS19740	0.30	-3.3
2,216,440	+		BBR_RS19740	0.30	-5.3
2,216,443	-		BBR_RS19740	0.30	-3.4
2,216,445	+		BBR_RS19740	0.31	-4.5
2,216,445	+		BBR_RS19740	0.31	-6.0
2,216,445	+		BBR_RS19740	0.31	-3.2
2,216,448	-		BBR_RS19740	0.31	-4.4
2,216,448	-		BBR_RS19740	0.31	-3.3
2,216,453	-		BBR_RS19740	0.31	-3.2
2,216,453	-		BBR_RS19740	0.31	-4.5
2,216,476	-		BBR_RS19740	0.33	-2.9
2,216,476	-		BBR_RS19740	0.33	-3.3
2,216,489	+		BBR_RS19740	0.34	-3.5
2,216,489	+		BBR_RS19740	0.34	-4.4
2,216,489	+		BBR_RS19740	0.34	-2.4
2,216,495	-		BBR_RS19740	0.34	-1.7
2,216,497	-		BBR_RS19740	0.34	-3.0
2,216,497	-		BBR_RS19740	0.34	-2.4
2,216,497	-		BBR_RS19740	0.34	-4.4
2,216,497	-		BBR_RS19740	0.34	-3.3
2,216,497	-		BBR_RS19740	0.34	-4.2
2,216,497	-		BBR_RS19740	0.34	-2.3
2,216,512	-		BBR_RS19740	0.35	-3.2
2,216,513	+		BBR_RS19740	0.36	-4.1
2,216,513	+		BBR_RS19740	0.36	-3.3
2,216,521	-		BBR_RS19740	0.36	-3.0
2,216,523	-		BBR_RS19740	0.36	-2.3
2,216,525	+		BBR_RS19740	0.36	-4.4
2,216,530	+		BBR_RS19740	0.37	-4.1
2,216,530	-		BBR_RS19740	0.37	-2.3
2,216,533	-		BBR_RS19740	0.37	-5.7
2,216,581	-		BBR_RS19740	0.41	-4.4
2,216,585	-		BBR_RS19740	0.41	-2.1
2,216,593	+		BBR_RS19740	0.41	-2.6
2,216,626	-		BBR_RS19740	0.44	-3.4
2,216,626	-		BBR_RS19740	0.44	-4.8
2,216,626	-		BBR_RS19740	0.44	-2.8
2,216,626	-		BBR_RS19740	0.44	-4.9
2,216,628	+		BBR_RS19740	0.44	-4.1
2,216,631	-		BBR_RS19740	0.44	-4.3
2,216,644	+		BBR_RS19740	0.45	-2.2
2,216,650	+		BBR_RS19740	0.46	-4.5
2,216,672	+		BBR_RS19740	0.47	-2.1
2,216,672	+		BBR_RS19740	0.47	-4.3
2,216,672	+		BBR_RS19740	0.47	-2.3
2,216,672	+		BBR_RS19740	0.47	-4.0
2,216,680	-		BBR_RS19740	0.48	-3.6
2,216,680	-		BBR_RS19740	0.48	-4.0
2,216,686	+		BBR_RS19740	0.48	-3.6
2,216,724	+		BBR_RS19740	0.51	-3.5
2,216,724	+		BBR_RS19740	0.51	-3.3
2,216,724	+		BBR_RS19740	0.51	-4.1
2,216,724	+		BBR_RS19740	0.51	-4.3
2,216,724	+		BBR_RS19740	0.51	-2.4
2,216,732	-		BBR_RS19740	0.52	-4.3
2,216,732	-		BBR_RS19740	0.52	-2.4
2,216,742	-		BBR_RS19740	0.52	-3.9
2,216,750	+		BBR_RS19740	0.53	-5.0
2,216,760	-		BBR_RS19740	0.54	-5.3
2,216,760	-		BBR_RS19740	0.54	-4.1
2,216,764	+		BBR_RS19740	0.54	-3.2
2,216,786	-		BBR_RS19740	0.56	-2.4
2,216,795	+		BBR_RS19740	0.56	-1.5
2,216,831	+		BBR_RS19740	0.59	-4.7
2,216,833	+		BBR_RS19740	0.59	-3.0
2,216,839	+		BBR_RS19740	0.60	-3.6
2,216,849	-		BBR_RS19740	0.60	-4.2
2,216,858	+		BBR_RS19740	0.61	-3.5
2,216,867	-		BBR_RS19740	0.62	-4.5
2,216,873	+		BBR_RS19740	0.62	-4.6
2,216,880	-		BBR_RS19740	0.63	-5.0
2,216,913	-		BBR_RS19740	0.65	-2.2
2,216,929	-		BBR_RS19740	0.66	-2.2
2,216,929	-		BBR_RS19740	0.66	-2.4
2,216,948	+		BBR_RS19740	0.68	-4.2
2,216,992	-		BBR_RS19740	0.71	-2.2
2,216,992	-		BBR_RS19740	0.71	-3.8
2,216,999	+		BBR_RS19740	0.71	-4.2
2,217,000	-		BBR_RS19740	0.72	-4.5
2,217,021	-		BBR_RS19740	0.73	-2.5
2,217,047	+		BBR_RS19740	0.75	-4.3
2,217,059	-		BBR_RS19740	0.76	-4.3
2,217,097	-		BBR_RS19740	0.79	-3.2
2,217,098	-		BBR_RS19740	0.79	-4.4
2,217,098	-		BBR_RS19740	0.79	-4.1
2,217,106	+		BBR_RS19740	0.79	-3.1
2,217,115	+		BBR_RS19740	0.80	-3.8
2,217,152	+		BBR_RS19740	0.83	-2.0
2,217,152	+		BBR_RS19740	0.83	-1.8
2,217,152	+		BBR_RS19740	0.83	-2.5
2,217,153	-		BBR_RS19740	0.83	-3.9
2,217,160	-		BBR_RS19740	0.83	-4.4
2,217,160	-		BBR_RS19740	0.83	-4.6
2,217,191	+		BBR_RS19740	0.86	-3.3
2,217,196	+		BBR_RS19740	0.86	-2.7
2,217,206	+		BBR_RS19740	0.87	-3.4
2,217,206	+		BBR_RS19740	0.87	-2.4
2,217,237	-		BBR_RS19740	0.89	-4.4
2,217,240	-		BBR_RS19740	0.89	-2.4
2,217,255	-				-4.1
2,217,274	+				-4.0
2,217,274	+				-2.6
2,217,274	+				-3.3
2,217,274	+				-3.1
2,217,282	-				-3.6
2,217,284	-				-2.5
2,217,289	-				-5.1
2,217,294	-				-3.8
2,217,307	+				-3.7
2,217,307	+				-2.2
2,217,315	+				-1.5
2,217,315	-				-3.2
2,217,315	-				-3.6
2,217,315	-				-1.0
2,217,315	-				-4.1
2,217,315	-				-1.1
2,217,315	-				-3.7
2,217,315	-				-4.1
2,217,317	+				-5.2
2,217,341	+				-3.1
2,217,347	+				-3.7
2,217,364	+				-3.0
2,217,378	-				-1.5
2,217,387	+				-1.5
2,217,395	-				-1.2
2,217,398	+				-0.7
2,217,406	-				-0.1
2,217,413	-				-1.9
2,217,418	-				-1.1
2,217,423	-				-2.5
2,217,433	+				+1.0
2,217,433	+				-1.4
2,217,433	+				-0.0
2,217,433	-				+0.1
2,217,433	-				-1.5
2,217,441	-				-0.8
2,217,441	-				-0.9
2,217,441	-				-0.5
2,217,441	-				+1.0
2,217,441	-				+0.0
2,217,441	-				+0.0
2,217,441	-				-1.4
2,217,441	-				-0.7
2,217,447	+				-0.1
2,217,447	+				-0.6
2,217,474	-				-0.2
2,217,474	-				-0.6
2,217,474	-				-0.6
2,217,507	-				-0.1
2,217,513	+				-0.6
2,217,527	+				-1.2
2,217,527	+				-2.9
2,217,527	+				-1.6
2,217,552	+				-2.8
2,217,552	+				-1.3
2,217,568	-				-1.2
2,217,626	-				-1.6
2,217,631	+				-0.0
2,217,687	+				-0.7
2,217,693	-				-2.1
2,217,701	-				-0.5
2,217,705	-				-0.7
2,217,708	+				-1.1
2,217,708	+				-2.0
2,217,708	+				-3.3
2,217,708	+				-0.9
2,217,708	+				-2.9
2,217,708	+				-0.7
2,217,708	+				-3.1
2,217,708	+				-2.4
2,217,716	-				-1.8
2,217,716	-				-1.6
2,217,716	-				-0.2
2,217,717	-				-1.2
2,217,719	+				-1.2
2,217,726	+				-0.6
2,217,728	+				-2.5
2,217,728	+				-3.9
2,217,732	-				-0.5
2,217,759	+		BBR_RS19745	0.10	+1.0
2,217,767	-		BBR_RS19745	0.11	-1.3
2,217,767	-		BBR_RS19745	0.11	+0.4
2,217,769	-		BBR_RS19745	0.11	-2.1
2,217,774	-		BBR_RS19745	0.11	-3.3
2,217,778	+		BBR_RS19745	0.11	-2.5
2,217,784	-		BBR_RS19745	0.11	-1.0
2,217,798	-		BBR_RS19745	0.12	-1.2
2,217,800	-		BBR_RS19745	0.12	-2.2
2,217,806	-		BBR_RS19745	0.12	-0.8
2,217,806	-		BBR_RS19745	0.12	-1.6
2,217,811	-		BBR_RS19745	0.13	-3.9
2,217,830	-		BBR_RS19745	0.13	-1.0
2,217,843	+		BBR_RS19745	0.14	-0.3
2,217,843	+		BBR_RS19745	0.14	-0.6
2,217,843	+		BBR_RS19745	0.14	-1.2
2,217,846	-		BBR_RS19745	0.14	-2.7
2,217,848	+		BBR_RS19745	0.14	-2.9
2,217,848	+		BBR_RS19745	0.14	-1.9
2,217,851	-		BBR_RS19745	0.14	-3.4
2,217,851	-		BBR_RS19745	0.14	-0.8
2,217,852	-		BBR_RS19745	0.14	-1.2
2,217,856	-		BBR_RS19745	0.15	-2.3
2,217,863	-		BBR_RS19745	0.15	-3.8
2,217,870	+		BBR_RS19745	0.15	-2.2
2,217,883	-		BBR_RS19745	0.16	-2.4
2,217,928	-		BBR_RS19745	0.18	-0.7
2,217,942	+		BBR_RS19745	0.18	-1.1
2,217,944	+		BBR_RS19745	0.18	-0.7
2,217,945	-		BBR_RS19745	0.18	-1.1
2,217,955	-		BBR_RS19745	0.19	-0.6
2,217,962	+		BBR_RS19745	0.19	-3.6
2,217,970	+		BBR_RS19745	0.20	-1.3
2,217,970	+		BBR_RS19745	0.20	-0.7
2,217,990	-		BBR_RS19745	0.20	-2.7
2,217,991	+		BBR_RS19745	0.21	-3.2
2,217,999	-		BBR_RS19745	0.21	-0.4
2,218,048	-		BBR_RS19745	0.23	-2.9
2,218,050	-		BBR_RS19745	0.23	-2.1
2,218,073	+		BBR_RS19745	0.24	-1.3
2,218,073	+		BBR_RS19745	0.24	-1.5
2,218,079	+		BBR_RS19745	0.24	+0.4
2,218,101	+		BBR_RS19745	0.25	-1.4
2,218,109	+		BBR_RS19745	0.26	-3.0
2,218,115	-		BBR_RS19745	0.26	-4.0
2,218,117	-		BBR_RS19745	0.26	-1.8
2,218,165	+		BBR_RS19745	0.28	-3.3
2,218,179	+		BBR_RS19745	0.29	-2.4
2,218,187	-		BBR_RS19745	0.29	-3.9
2,218,187	-		BBR_RS19745	0.29	-2.4
2,218,209	+		BBR_RS19745	0.30	-1.0
2,218,216	-		BBR_RS19745	0.30	-2.4
2,218,235	+		BBR_RS19745	0.31	-1.2
2,218,251	-		BBR_RS19745	0.32	-1.2
2,218,334	+		BBR_RS19745	0.36	+0.1
2,218,337	+		BBR_RS19745	0.36	-2.0
2,218,349	+		BBR_RS19745	0.36	-1.2
2,218,354	+		BBR_RS19745	0.37	-2.5
2,218,357	-		BBR_RS19745	0.37	-4.2
2,218,362	-		BBR_RS19745	0.37	-3.2
2,218,371	+		BBR_RS19745	0.37	-1.2