Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19975 and AO356_19980 are separated by 3 nucleotides AO356_19980 and AO356_19985 overlap by 4 nucleotides
AO356_19975: AO356_19975 - chemotaxis protein CheY, at 4,471,526 to 4,472,746
_19975
AO356_19980: AO356_19980 - pilus assembly protein CpaF, at 4,472,750 to 4,474,192
_19980
AO356_19985: AO356_19985 - secretion system protein, at 4,474,189 to 4,475,175
_19985
Position (kb) 4472
4473
4474
4475 Strain fitness (log2 ratio) -1
0
1 at 4472.056 kb on + strand, within AO356_19975 at 4472.102 kb on + strand, within AO356_19975 at 4472.303 kb on + strand, within AO356_19975 at 4472.303 kb on + strand, within AO356_19975 at 4472.304 kb on - strand, within AO356_19975 at 4472.304 kb on - strand, within AO356_19975 at 4472.304 kb on - strand, within AO356_19975 at 4472.381 kb on + strand, within AO356_19975 at 4472.381 kb on + strand, within AO356_19975 at 4472.381 kb on + strand, within AO356_19975 at 4472.382 kb on - strand, within AO356_19975 at 4472.382 kb on - strand, within AO356_19975 at 4472.382 kb on - strand, within AO356_19975 at 4472.713 kb on + strand at 4472.888 kb on + strand at 4472.889 kb on - strand at 4472.889 kb on - strand at 4472.942 kb on + strand, within AO356_19980 at 4472.942 kb on + strand, within AO356_19980 at 4472.943 kb on - strand, within AO356_19980 at 4472.943 kb on - strand, within AO356_19980 at 4473.022 kb on + strand, within AO356_19980 at 4473.148 kb on + strand, within AO356_19980 at 4473.149 kb on - strand, within AO356_19980 at 4473.188 kb on + strand, within AO356_19980 at 4473.188 kb on + strand, within AO356_19980 at 4473.189 kb on - strand, within AO356_19980 at 4473.189 kb on - strand, within AO356_19980 at 4473.189 kb on - strand, within AO356_19980 at 4473.189 kb on - strand, within AO356_19980 at 4473.256 kb on + strand, within AO356_19980 at 4473.256 kb on + strand, within AO356_19980 at 4473.441 kb on + strand, within AO356_19980 at 4473.441 kb on + strand, within AO356_19980 at 4473.441 kb on + strand, within AO356_19980 at 4473.442 kb on - strand, within AO356_19980 at 4474.311 kb on + strand, within AO356_19985 at 4474.385 kb on - strand, within AO356_19985 at 4474.792 kb on + strand, within AO356_19985 at 4474.793 kb on - strand, within AO356_19985 at 4474.793 kb on - strand, within AO356_19985 at 4475.062 kb on + strand, within AO356_19985 at 4475.062 kb on + strand, within AO356_19985 at 4475.062 kb on + strand, within AO356_19985 at 4475.063 kb on - strand, within AO356_19985 at 4475.063 kb on - strand, within AO356_19985 at 4475.063 kb on - strand, within AO356_19985 at 4475.063 kb on - strand, within AO356_19985 at 4475.091 kb on - strand at 4475.147 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 4,472,056 + AO356_19975 0.43 +1.3 4,472,102 + AO356_19975 0.47 +1.3 4,472,303 + AO356_19975 0.64 -0.9 4,472,303 + AO356_19975 0.64 -1.0 4,472,304 - AO356_19975 0.64 +0.4 4,472,304 - AO356_19975 0.64 +0.7 4,472,304 - AO356_19975 0.64 -0.2 4,472,381 + AO356_19975 0.70 +1.0 4,472,381 + AO356_19975 0.70 -0.3 4,472,381 + AO356_19975 0.70 +1.3 4,472,382 - AO356_19975 0.70 -1.3 4,472,382 - AO356_19975 0.70 -0.1 4,472,382 - AO356_19975 0.70 -0.0 4,472,713 + +0.1 4,472,888 + -0.3 4,472,889 - +0.7 4,472,889 - -0.1 4,472,942 + AO356_19980 0.13 -1.2 4,472,942 + AO356_19980 0.13 +0.2 4,472,943 - AO356_19980 0.13 +0.7 4,472,943 - AO356_19980 0.13 +0.3 4,473,022 + AO356_19980 0.19 -0.5 4,473,148 + AO356_19980 0.28 +0.0 4,473,149 - AO356_19980 0.28 +1.1 4,473,188 + AO356_19980 0.30 -0.3 4,473,188 + AO356_19980 0.30 -0.3 4,473,189 - AO356_19980 0.30 -0.7 4,473,189 - AO356_19980 0.30 -0.4 4,473,189 - AO356_19980 0.30 -0.1 4,473,189 - AO356_19980 0.30 -0.2 4,473,256 + AO356_19980 0.35 -1.0 4,473,256 + AO356_19980 0.35 -0.2 4,473,441 + AO356_19980 0.48 +0.7 4,473,441 + AO356_19980 0.48 -0.0 4,473,441 + AO356_19980 0.48 +0.2 4,473,442 - AO356_19980 0.48 +0.5 4,474,311 + AO356_19985 0.12 -0.1 4,474,385 - AO356_19985 0.20 +0.3 4,474,792 + AO356_19985 0.61 +0.1 4,474,793 - AO356_19985 0.61 +0.9 4,474,793 - AO356_19985 0.61 +1.6 4,475,062 + AO356_19985 0.88 +1.1 4,475,062 + AO356_19985 0.88 +1.1 4,475,062 + AO356_19985 0.88 +0.3 4,475,063 - AO356_19985 0.89 -0.9 4,475,063 - AO356_19985 0.89 +0.5 4,475,063 - AO356_19985 0.89 +0.1 4,475,063 - AO356_19985 0.89 -0.1 4,475,091 - +0.5 4,475,147 + +1.6
Or see this region's nucleotide sequence