Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31600

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31595 and RR42_RS31600 are separated by 53 nucleotidesRR42_RS31600 and RR42_RS31605 are separated by 523 nucleotides RR42_RS31595: RR42_RS31595 - hypothetical protein, at 2,467,410 to 2,467,958 _RS31595 RR42_RS31600: RR42_RS31600 - hypothetical protein, at 2,468,012 to 2,468,725 _RS31600 RR42_RS31605: RR42_RS31605 - permease, at 2,469,249 to 2,470,667 _RS31605 Position (kb) 2468 2469Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2467.281 kb on + strandat 2467.282 kb on - strandat 2467.282 kb on - strandat 2467.674 kb on + strand, within RR42_RS31595at 2467.845 kb on + strand, within RR42_RS31595at 2467.857 kb on + strand, within RR42_RS31595at 2467.925 kb on - strandat 2467.925 kb on - strandat 2468.059 kb on - strandat 2468.101 kb on - strand, within RR42_RS31600at 2468.101 kb on - strand, within RR42_RS31600at 2468.225 kb on + strand, within RR42_RS31600at 2468.564 kb on - strand, within RR42_RS31600at 2468.743 kb on + strandat 2468.808 kb on - strandat 2468.975 kb on + strandat 2468.976 kb on - strandat 2469.034 kb on + strandat 2469.361 kb on - strandat 2469.439 kb on - strand, within RR42_RS31605

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,467,281 + -0.4
2,467,282 - -0.1
2,467,282 - -0.6
2,467,674 + RR42_RS31595 0.48 -0.4
2,467,845 + RR42_RS31595 0.79 +0.0
2,467,857 + RR42_RS31595 0.81 -3.1
2,467,925 - +0.4
2,467,925 - -0.3
2,468,059 - +0.6
2,468,101 - RR42_RS31600 0.12 -0.5
2,468,101 - RR42_RS31600 0.12 -0.2
2,468,225 + RR42_RS31600 0.30 -0.2
2,468,564 - RR42_RS31600 0.77 -0.8
2,468,743 + +0.3
2,468,808 - +2.0
2,468,975 + -0.7
2,468,976 - -0.2
2,469,034 + -0.4
2,469,361 - -0.5
2,469,439 - RR42_RS31605 0.13 +0.7

Or see this region's nucleotide sequence